View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3776_low_1 (Length: 778)
Name: NF3776_low_1
Description: NF3776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3776_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 533; Significance: 0; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 8 - 676
Target Start/End: Original strand, 33062277 - 33062936
Alignment:
| Q |
8 |
gataatactagtatggtagaagtccaaatccaacatgtaggaacaacaaacaactaagcaagaatatacaatatttcaccatcaaaccatggatgacaac |
107 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33062277 |
gataatactagtatg-tagaagtccaaatccaacatgtaggaacaacaaacaactaagcaagaatatacaatatttcaccatcaaaccatggatgacaac |
33062375 |
T |
|
| Q |
108 |
atccacatgtcaagttgagttaaatttgtatctagtgtatatatctttttgtgtataatatgaataatgttctaaaaatatatttatatagataatgatg |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33062376 |
atccacatgtcaagttgagttaaatttgtatctagtgtatatatctttttgtgtataatatgaataatgttctaaaaatatgtttatatagataatgatg |
33062475 |
T |
|
| Q |
208 |
caagaggaagaaaattggagtcagagaaacccagagtgaat-agtatctcataaacaatatttcatatcaagaaaaattaataagctcggtgacatcatt |
306 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33062476 |
caagaggaagaaaattggagtcagagaaacccagagtgaatgggtatttcataaacaatatttcatatcaagaaaaattaataagctcggtgacatcatt |
33062575 |
T |
|
| Q |
307 |
ttgtatctaatacattttatggctcaatcttggctaaaacatgtagtatttgactttttcaaatatttgcattaaatatgagcctagtctggtttggtag |
406 |
Q |
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||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33062576 |
ttgcatctaatacattatatggctcaatcttggctaaaacatgtagtatttgattttttcaaatatttgcattaaatatgagcctagtctggttcggtag |
33062675 |
T |
|
| Q |
407 |
gcttaattgggagagccaaaatgttcaaannnnnnngattgtataatttaggaactcaagttagtctaaaagatgagctcattgagctagacaaaaattg |
506 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33062676 |
gcttaattgggagagccaaaatgttcaaatttttttgattgtataatttaggaactcaagttagtctaaaagatgagctcattgagctagacaaaaattg |
33062775 |
T |
|
| Q |
507 |
acatcattgacacatacgtatagaaggttaggacattgtttatcctccaccttcattattgaaaaacccatatgtttttggaagtgcacactcaaaccac |
606 |
Q |
| |
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|||||||||||||||||||||| ||||||||| |||||||| ||||||| ||||||||||||||| |||||||||||||||||||| ||| |
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| T |
33062776 |
acatcattgacacatacgtataaaaggttagggcattgttttatctccaccctcattattgaaaaacacatatgtttttggaagtgca---------cac |
33062866 |
T |
|
| Q |
607 |
acaaattgtctgaaagtgcacactcaacccatatgtttttcgaaaacatgtatctaaaaacaacctttaa |
676 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||| |
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| T |
33062867 |
acaaattgtctgaaagtgcacactcaacccatatgtttttcaaaaacatgtatctaagaacaatctttaa |
33062936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 522 - 762
Target Start/End: Original strand, 33083368 - 33083606
Alignment:
| Q |
522 |
acgtatagaaggttaggacattgtttatcctccaccttcattattgaaaaacccatatgtttttggaagtgcacactcaaaccacacaaattgtctgaaa |
621 |
Q |
| |
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||||||| ||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||| |
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| T |
33083368 |
acgtataaaaggttagggcattgtttatc-tccaccctcattattgaaaaacccatatgtttttagaagtgcacactcaaaccacataaattgtttgaaa |
33083466 |
T |
|
| Q |
622 |
gtgcacactcaacccatatgtttttcgaaaacatgtatctaaaaacaacctttaatcaattactactccacacatctaaatggtcactttccaaaacagt |
721 |
Q |
| |
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|||||||||||||||||||||||| | ||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33083467 |
gtgcacactcaacccatatgttttacaaaaacatgtatttaagaacaacctttaatcaattacgactccacacatctaaatggtcactttccaaaacagt |
33083566 |
T |
|
| Q |
722 |
atccaaaatgttcatgaccactttagcctaatcgagttaag |
762 |
Q |
| |
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||||||||||||||||||||| |||||||||| |||||||| |
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| T |
33083567 |
atccaaaatgttcatgaccac-ttagcctaattgagttaag |
33083606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 603 - 676
Target Start/End: Original strand, 33063958 - 33064031
Alignment:
| Q |
603 |
ccacacaaattgtctgaaagtgcacactcaacccatatgtttttcgaaaacatgtatctaaaaacaacctttaa |
676 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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|
| T |
33063958 |
ccacacaaattgtctgaaagtgcacactcaacccatatgtttttcaaaaacatgtatctaagaacaacctttaa |
33064031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 603 - 676
Target Start/End: Original strand, 33065044 - 33065117
Alignment:
| Q |
603 |
ccacacaaattgtctgaaagtgcacactcaacccatatgtttttcgaaaacatgtatctaaaaacaacctttaa |
676 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
33065044 |
ccacacaaattgtctgaaagtgcacactcaacccatatgtttttcaaaaacatgtatctaagaacaacctttaa |
33065117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 603 - 676
Target Start/End: Original strand, 33067204 - 33067277
Alignment:
| Q |
603 |
ccacacaaattgtctgaaagtgcacactcaacccatatgtttttcgaaaacatgtatctaaaaacaacctttaa |
676 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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|
| T |
33067204 |
ccacacaaattgtctgaaagtgcacactcaacccatatgtttttcaaaaacatgtatctaagaacaacctttaa |
33067277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 603 - 676
Target Start/End: Original strand, 33069342 - 33069415
Alignment:
| Q |
603 |
ccacacaaattgtctgaaagtgcacactcaacccatatgtttttcgaaaacatgtatctaaaaacaacctttaa |
676 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
33069342 |
ccacacaaattgtctgaaagtgcacactcaacccatatgtttttcaaaaacatgtatctaagaacaacctttaa |
33069415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 603 - 676
Target Start/End: Original strand, 33066118 - 33066191
Alignment:
| Q |
603 |
ccacacaaattgtctgaaagtgcacactcaacccatatgtttttcgaaaacatgtatctaaaaacaacctttaa |
676 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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|
| T |
33066118 |
ccacacaaattgtttgaaagtgcacactcaacccatatgtttttcaaaaacatgtatctaagaacaacctttaa |
33066191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 603 - 676
Target Start/End: Original strand, 33068256 - 33068329
Alignment:
| Q |
603 |
ccacacaaattgtctgaaagtgcacactcaacccatatgtttttcgaaaacatgtatctaaaaacaacctttaa |
676 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
33068256 |
ccacacaaattgtttgaaagtgcacactcaacccatatgtttttcaaaaacatgtatctaagaacaacctttaa |
33068329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 355 - 434
Target Start/End: Original strand, 33083249 - 33083328
Alignment:
| Q |
355 |
tttgactttttcaaatatttgcattaaatatgagcctagtctggtttggtaggcttaattgggagagccaaaatgttcaa |
434 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||| |
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|
| T |
33083249 |
tttgactttttcaactgtttgcattaaatatgagcctagtctgattcggtaggcttaattggtagagccaaaatgttcaa |
33083328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 33081689 - 33081748
Alignment:
| Q |
16 |
tagtatggtagaagtccaaatccaacatgtaggaacaacaaacaactaagcaagaatata |
75 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33081689 |
tagtatagtagaagtccaaatccaacatgtaggaacaacaaacaactaagcaagaatata |
33081748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 195 - 306
Target Start/End: Original strand, 33081782 - 33081894
Alignment:
| Q |
195 |
atagataatgatgcaagaggaagaaaattggagtcagagaaacccagagtgaatagtatctcataaacaata---tttcatatcaagaaaaattaataag |
291 |
Q |
| |
|
||||||||| |||||||||||||| ||| ||||||||| || |||||| ||| |||| |||||||||||| ||||||||||||||||||||||||| |
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|
| T |
33081782 |
atagataataatgcaagaggaagagaatcggagtcaga--aagtcagagtaaatggtatttcataaacaatagtatttcatatcaagaaaaattaataag |
33081879 |
T |
|
| Q |
292 |
ctcggtgacatcatt |
306 |
Q |
| |
|
|| ||||||||||| |
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|
| T |
33081880 |
atcagtgacatcatt |
33081894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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