View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3776_low_12 (Length: 233)
Name: NF3776_low_12
Description: NF3776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3776_low_12 |
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| [»] scaffold0272 (1 HSPs) |
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Alignment Details
Target: scaffold0272 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 6103 - 5883
Alignment:
| Q |
1 |
tgactccttaaccagtgccccggaagcactggttaacattacatcgtggtctctttttacgattttcacatgcaccattaagtatggtaacttagccaga |
100 |
Q |
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| T |
6103 |
tgactccttaaccagtgccccggaagcactggttaacattacatcgtggtctctttttacgattttcacatgcaccattaagtatggtaacttagccaga |
6004 |
T |
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| Q |
101 |
atttagagttaaaggaatttacaaaaaataatcgacaacatatttcaagatttgttgaagatgtttccttgaaagcttgaacataaaatgatcgaattct |
200 |
Q |
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| T |
6003 |
attcagagctaaaggaatttacaaaaaataatcgacaacatatttcaagatttgttgaagatgtttccttgaaagcttgaacataaaatgatcgaattct |
5904 |
T |
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| Q |
201 |
gaagaattaatgtatccaaac |
221 |
Q |
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| T |
5903 |
gaagaattaatgtatccaaac |
5883 |
T |
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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 21176208 - 21176268
Alignment:
| Q |
123 |
aaaaaataatcgacaacatatttcaagatttgttgaagatgtttccttgaaagcttgaaca |
183 |
Q |
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||||||||||||| | ||||||||| ||||||||||||||| ||||||||| ||||||||| |
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| T |
21176208 |
aaaaaataatcgataccatatttcatgatttgttgaagatgcttccttgaaggcttgaaca |
21176268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 32022695 - 32022735
Alignment:
| Q |
1 |
tgactccttaaccagtgccccggaagcactggttaacatta |
41 |
Q |
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||||||||||||||||||||| | ||||||||||||||||| |
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| T |
32022695 |
tgactccttaaccagtgcccccggagcactggttaacatta |
32022735 |
T |
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