View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3776_low_4 (Length: 343)
Name: NF3776_low_4
Description: NF3776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3776_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 38439508 - 38439181
Alignment:
| Q |
1 |
tcatcatgcaaaatgtacatagcaggaactcggttggaaacatggttgagcttattctaattgcatacatagtggcaagtcagagtaacaaaaaagacaa |
100 |
Q |
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| T |
38439508 |
tcatcatgcaaaatgtacatagcaggaactcggttcgaaacatggttgagcttattctaattacatacatagtggcaagtcagagtaacaaaaaagacaa |
38439409 |
T |
|
| Q |
101 |
agatgttaattagtgagtgaaaacattgtattgttcatattgaatgatcaacgatacccaagctaaaatcgagtggtcacatgtgtttagtttgatagtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38439408 |
agatgttaattagtgagtgaaaacattgtattgttcatattgaatgatcaacgatacccaagctaaaatcgagtggtcacatgtgtttagtttgatagtg |
38439309 |
T |
|
| Q |
201 |
tctaaatatagcattataatagcactggttcataagctacccttgtaactaacattctaattgtagttactgtaacttgcatctaaaattagttattcta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38439308 |
tctaaatatagcattataatagcactggttcataagctacccttgtaactaacattctaattgtagttactgtaacatgcatctaaaattagttattcta |
38439209 |
T |
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| Q |
301 |
aattccaaatatatttatacttaaattt |
328 |
Q |
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|| ||||||||||||||||||||||||| |
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| T |
38439208 |
aaatccaaatatatttatacttaaattt |
38439181 |
T |
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