View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3776_low_8 (Length: 259)

Name: NF3776_low_8
Description: NF3776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3776_low_8
NF3776_low_8
[»] chr1 (1 HSPs)
chr1 (56-158)||(6076222-6076324)
[»] chr4 (2 HSPs)
chr4 (56-159)||(39522966-39523070)
chr4 (90-159)||(11806352-11806421)
[»] chr5 (1 HSPs)
chr5 (56-159)||(33002170-33002273)
[»] chr8 (6 HSPs)
chr8 (90-159)||(5291082-5291151)
chr8 (94-154)||(15125200-15125260)
chr8 (94-146)||(5283600-5283652)
chr8 (94-156)||(14950404-14950466)
chr8 (94-159)||(5305948-5306013)
chr8 (94-150)||(5313161-5313217)
[»] chr6 (1 HSPs)
chr6 (94-158)||(31527085-31527149)


Alignment Details
Target: chr1 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 56 - 158
Target Start/End: Complemental strand, 6076324 - 6076222
Alignment:
Q  56 tttttgtttgatgtgttgttacctacaccatcctattaaatgctgaaaccattttcacagttcttgcaacattgaggagcatgggagaacctgttagaat 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  6076324 tttttgtttgatgtgttgttacctacaccatcctattaaatgctgaaaccattttcacagtccttgcaacattgaggagcatgggagaacctgttagaat 6076225  T
Q  156 gat 158  Q
    |||    
T  6076224 gat 6076222  T

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Target: chr4 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 56 - 159
Target Start/End: Original strand, 39522966 - 39523070
Alignment:
Q  56 tttttgtttgatgtgttgttacctacaccatcctattaaatgctgaaa-ccattttcacagttcttgcaacattgaggagcatgggagaacctgttagaa 154  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39522966 tttttgtttgatgtgttgttacctacaccatcctattaaatgctgaaaaccattttcacagttcttgcaacattgaggagcatgggagaacctgttagaa 39523065  T
Q  155 tgatc 159  Q
    |||||    
T  39523066 tgatc 39523070  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 90 - 159
Target Start/End: Complemental strand, 11806421 - 11806352
Alignment:
Q  90 attaaatgctgaaaccattttcacagttcttgcaacattgaggagcatgggagaacctgttagaatgatc 159  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11806421 attaaatgctgaaaccattttcacagttcttgcaacattgaggaacatgggagaacctgttagaatgatc 11806352  T

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Target: chr5 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 56 - 159
Target Start/End: Complemental strand, 33002273 - 33002170
Alignment:
Q  56 tttttgtttgatgtgttgttacctacaccatcctattaaatgctgaaaccattttcacagttcttgcaacattgaggagcatgggagaacctgttagaat 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  33002273 tttttgtttgatgtgttgttacctacaccatcctattaaatgctgaaaccattttcacagttcttgcaacatcgaagagcatgggagaacctgttagaat 33002174  T
Q  156 gatc 159  Q
    ||||    
T  33002173 gatc 33002170  T

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Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 90 - 159
Target Start/End: Complemental strand, 5291151 - 5291082
Alignment:
Q  90 attaaatgctgaaaccattttcacagttcttgcaacattgaggagcatgggagaacctgttagaatgatc 159  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5291151 attaaatgctgaaaccattttcacagttcttgcaacattgaggaacatgggagaacctgttagaatgatc 5291082  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 94 - 154
Target Start/End: Original strand, 15125200 - 15125260
Alignment:
Q  94 aatgctgaaaccattttcacagttcttgcaacattgaggagcatgggagaacctgttagaa 154  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  15125200 aatgctgaaaccattttcacagttcttgcaacattaaggaacatgggagaacctgttagaa 15125260  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 94 - 146
Target Start/End: Complemental strand, 5283652 - 5283600
Alignment:
Q  94 aatgctgaaaccattttcacagttcttgcaacattgaggagcatgggagaacc 146  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  5283652 aatgctgaaaccgttttcacagttcttgcaacattgaggaacatgggagaacc 5283600  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 156
Target Start/End: Complemental strand, 14950466 - 14950404
Alignment:
Q  94 aatgctgaaaccattttcacagttcttgcaacattgaggagcatgggagaacctgttagaatg 156  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||| ||| ||| ||||    
T  14950466 aatgctgaaaccattttcacagttcttgcaacattggggaacatgggagagcctattataatg 14950404  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 159
Target Start/End: Original strand, 5305948 - 5306013
Alignment:
Q  94 aatgctgaaaccattttcacagttcttgcaacattgaggagcatgggagaacctgttagaatgatc 159  Q
    |||||||||| |||||||||| |||||| | ||||||||| ||||| |||||||||||| ||||||    
T  5305948 aatgctgaaatcattttcacaattcttgtagcattgaggaacatggcagaacctgttaggatgatc 5306013  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 94 - 150
Target Start/End: Original strand, 5313161 - 5313217
Alignment:
Q  94 aatgctgaaaccattttcacagttcttgcaacattgaggagcatgggagaacctgtt 150  Q
    ||||| || |||||||| |||||||||||||||||||||| ||||||||| ||||||    
T  5313161 aatgccgataccatttttacagttcttgcaacattgaggaacatgggagatcctgtt 5313217  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 31527149 - 31527085
Alignment:
Q  94 aatgctgaaaccattttcacagttcttgcaacattgaggagcatgggagaacctgttagaatgat 158  Q
    |||||| ||||||||||||||||||||||||||||||  ||||||||||| ||||||| ||||||    
T  31527149 aatgctcaaaccattttcacagttcttgcaacattgaaaagcatgggagatcctgttaaaatgat 31527085  T

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