View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3777_high_2 (Length: 279)
Name: NF3777_high_2
Description: NF3777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3777_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 8567982 - 8567712
Alignment:
| Q |
1 |
aaatctcttgaagccaacctctgaatagtcacttgaaagacagatgaaagaaatgcccccgcaatcagctctgccatgatattgagcacaaatgaagggt |
100 |
Q |
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| T |
8567982 |
aaatctcttgaagccaacctctgaatagtcacttgaaagacagacgaaagaaatgcccccgcaatcagctctgccatgatattgagcacaaatgaagggt |
8567883 |
T |
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| Q |
101 |
ctcaagatctgagtgcgatacgcaagcctgtgaggttctctgcaatatgtttgagtttccttagtcaagtgaatttaatggaacaggaattattttttat |
200 |
Q |
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| T |
8567882 |
ctcaagatctgaatgtgatacgcaagcctgtgaggttctctgcaatatgtttgagtttccttagtcaagtgaattgaatggaacaggaattattttttat |
8567783 |
T |
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| Q |
201 |
caaacatgtaaaattttcattttataataagaattatcgaatatcctcattgcaaaaaacgcagaataatc |
271 |
Q |
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| T |
8567782 |
caaacatgtaaaattttcattttataataagaattatcgaatatcctcattgcaaaaaacgcagaataatc |
8567712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 8472559 - 8472641
Alignment:
| Q |
1 |
aaatctcttgaagccaacctctgaatagtcacttgaaagacagatgaaagaaatgcccccgcaatcagctctgccatgatatt |
83 |
Q |
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||||||||||| || | ||||||| ||| |||||||||| |||||||||||||| || |||||| ||||||||||||||| |
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| T |
8472559 |
aaatctcttgaggcaatgctctgaagagtgacttgaaagaatgatgaaagaaatgctccaccaatcaactctgccatgatatt |
8472641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 6572326 - 6572243
Alignment:
| Q |
1 |
aaatctcttgaagccaacctctgaatagtcacttgaaagacagatgaaagaaatgcccccgcaatcagctctgccatgatattg |
84 |
Q |
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||||||||||| || ||||||| || ||| |||||||||| || ||||||||||| || |||||||||||||||||||||||| |
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| T |
6572326 |
aaatctcttgaggcaaacctctcaagagtgacttgaaagaacgacgaaagaaatgctccagcaatcagctctgccatgatattg |
6572243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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