View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3777_high_4 (Length: 224)
Name: NF3777_high_4
Description: NF3777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3777_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 20 - 210
Target Start/End: Original strand, 40348576 - 40348766
Alignment:
| Q |
20 |
aaattttttgacaagcttattttttattattaaccattgagaagtttataagcagggacatttgtttgcaaaaattcaatcaaaatggtttgatgaaaat |
119 |
Q |
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| T |
40348576 |
aaattttttgacaagcttattttttattattaactattgagaagtttataagcagggacatttgtttgcaaaaattcaatcaaaatggtttgatgaaaat |
40348675 |
T |
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| Q |
120 |
aagattaattatcattgatattgatgcaagattattgctttgtgcagaaatcttttgttttttgcacgaatacgagctacaacagtattat |
210 |
Q |
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|| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40348676 |
aatattaattatcattgatattgatataagattattgctttgtgcaggaatcttttgttttttgcacgaatacgagctacaacagtattat |
40348766 |
T |
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