View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3777_low_5 (Length: 259)
Name: NF3777_low_5
Description: NF3777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3777_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 2 - 254
Target Start/End: Complemental strand, 38272696 - 38272442
Alignment:
| Q |
2 |
accatcatcgcgatcttataaaaagctacaacaattcagacaaattcaccgtgataacaaacattcacacacaaacacaaatcatataagaatttgagtt |
101 |
Q |
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| T |
38272696 |
accatcatcgtgatcttataaaaagctacaacaattcagacaaattcaccgtgataacaaacattcacacacaaacacaaatcatataagaatttgagtt |
38272597 |
T |
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| Q |
102 |
aaataattaacaatgggtcccacctagatcaaacttttcatgttg--nnnnnnnnntctactaaataaaatggccaagtcccaaaaaccatcggtgcaat |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38272596 |
aaataattaacaatgggtcccacctagatcaaacttttcatgttgaaaaaaaaaaatctactaaataaaatggccaagtcccaaaaaccatcggtgcaat |
38272497 |
T |
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| Q |
200 |
aatatattcattcatttttctccttttatcactcctgtctttctccctctctgct |
254 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38272496 |
aatatattcattcatttttctccttttatcactcctgtctttctccctctctgct |
38272442 |
T |
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