View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3777_low_6 (Length: 242)
Name: NF3777_low_6
Description: NF3777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3777_low_6 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 8 - 242
Target Start/End: Complemental strand, 38272938 - 38272704
Alignment:
| Q |
8 |
acatcatcatattgtcaacaaagattcggtgtatgtttgatatcacaatgaatttgctataattacaataaagtaccgtaattttagctccttagataag |
107 |
Q |
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| T |
38272938 |
acatcatcatattgtcaacaaagattcggtgtatgtttgatatcacaatgaatttgctataattacaataaactaccgcaattttagctccttagataag |
38272839 |
T |
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| Q |
108 |
attgaatataaagagctaataaaaaccttgacagatcacttccaaagctgattacatgttactcgcaaacatcacattgtcaacaattcatatttgatat |
207 |
Q |
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| T |
38272838 |
attgaatataaagagctaacaaaaaccttgacagatcatttccaaagctgattacatgttactcgcaaacatcacattgtcaacaattcatatttggtat |
38272739 |
T |
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| Q |
208 |
cacaattgatatatttgttagaattacaataaacc |
242 |
Q |
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| T |
38272738 |
cacaattgatagatttgttagaattacaatgaacc |
38272704 |
T |
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