View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3777_low_9 (Length: 210)
Name: NF3777_low_9
Description: NF3777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3777_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 8e-91; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 35361404 - 35361216
Alignment:
| Q |
17 |
agagaggtcaatattccatttatcctcagatgtttcaatcgcagtaacctttcggttcttcgacttgtcactcaatctcatcgatgaaaagtgcttaatt |
116 |
Q |
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| T |
35361404 |
agagaggtcaatattccatttatcctcagatgtttcaatcgcagtaacctttcggttcttcgacttatcactcaatctcatcgatgaaaagtgcctaatt |
35361305 |
T |
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| Q |
117 |
gctattgccatgctggtgccgctgaacaatgaaaaagtctattccaaacaatttttaaggagtgcaacaaagtctc-tatatatactcc |
204 |
Q |
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| T |
35361304 |
gctattgccatgctggtgccgctcaacaatgaaaaagtctattccaaacaatttttaaggagtgcaacaaagtctcttatatatactcc |
35361216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 35344552 - 35344725
Alignment:
| Q |
17 |
agagaggtcaatattccatttatcctcagatgtttcaatcgcagtaacctttcg---------------gttcttcgacttgtcactcaatctcatcgat |
101 |
Q |
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| T |
35344552 |
agagaggtcaatattccatttatcctcagatgtttcaatcgcagtaacctttcctccacggtgctttgagttcttcgacttgtcattcaatctcatcgat |
35344651 |
T |
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| Q |
102 |
gaaaagtgcttaattgctattgccatgctggtgccgctgaacaatgaaaaagtctattccaaacaatttttaag |
175 |
Q |
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| T |
35344652 |
gaaaggtgcttaactgctgttgccatattggtgctgctaaacgatgaaaaagcctattccaagcaatttttaag |
35344725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 35354471 - 35354418
Alignment:
| Q |
64 |
cctttcggttcttcgacttgtcactcaatctcatcgatgaaaagtgcttaattg |
117 |
Q |
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| T |
35354471 |
cctttcggttcttcaacttgtcactgaatcttatcgatgaaaagtgcctaattg |
35354418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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