View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3778_high_4 (Length: 344)
Name: NF3778_high_4
Description: NF3778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3778_high_4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 29600706 - 29600363
Alignment:
| Q |
1 |
tccaaatcagtcttcaacttaaacataatatgaaccccatcaacctccaccttcaaaacctgatccccattaatcttactcaaaaaatcactataaggaa |
100 |
Q |
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| T |
29600706 |
tccaaatcagtcttcaacttaaacataatatgaaccccatcaacctccaccttcaaaacctgatccccattaatcttactcaaaaaatcactataaggaa |
29600607 |
T |
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| Q |
101 |
cactcacaaacaccgtcgaagctcgcgactccgaacccggtaacggaatcccaggtctaagcaacctcataacaaaaatcacaatccctaattgaagtaa |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29600606 |
cactcacaaacaccgtcgaagatcgcgactccgaacccggtaacggaatcccaggtctaagcaacctcataacaaaaatcacaatccctaattgaagtaa |
29600507 |
T |
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| Q |
201 |
caaaaccccaacttcttgtgcattcaacatgggttgccatttccatctccaccatccacctttcccttgcttctccttcctccgtttcgaaccacctgaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
29600506 |
caaaaccccaacttcttgtgcattcaacatgggttgccatttccatctccaccatccacctttcccttgcttctccttcctccggttcgaaccacctgaa |
29600407 |
T |
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| Q |
301 |
cccgcttcaacttcaacccctttcccctcttcactcttctcccc |
344 |
Q |
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| T |
29600406 |
cccggttcaacttcaacccctttcccctcttcactcttctcccc |
29600363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 249 - 284
Target Start/End: Original strand, 43309022 - 43309057
Alignment:
| Q |
249 |
ccaccatccacctttcccttgcttctccttcctccg |
284 |
Q |
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| T |
43309022 |
ccaccaaccacctttcccttgcttctccttcctccg |
43309057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 110
Target Start/End: Complemental strand, 25179016 - 25178940
Alignment:
| Q |
34 |
accccatcaacctccaccttcaaaacctgatccccattaatcttactcaaaaaatcactataaggaacactcacaaa |
110 |
Q |
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||||||||||||||||| ||| |||| || ||||||| |||||||||| ||||||||||| ||||||||||| |
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| T |
25179016 |
accccatcaacctccactttcctcacctcattaccattaactctactcaaaaactcactataaggcacactcacaaa |
25178940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 281
Target Start/End: Complemental strand, 21795490 - 21795458
Alignment:
| Q |
249 |
ccaccatccacctttcccttgcttctccttcct |
281 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
21795490 |
ccaccaaccacctttcccttgcttctccttcct |
21795458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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