View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3778_high_6 (Length: 297)
Name: NF3778_high_6
Description: NF3778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3778_high_6 |
 | |
|
| [»] scaffold0192 (1 HSPs) |
| | |
|
| [»] scaffold1155 (1 HSPs) |
| | |
|
| [»] scaffold0345 (1 HSPs) |
| | |
|
| [»] scaffold0105 (1 HSPs) |
| | |
|
| [»] scaffold0013 (2 HSPs) |
| | |
|
| [»] scaffold0059 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0192 (Bit Score: 129; Significance: 9e-67; HSPs: 1)
Name: scaffold0192
Description:
Target: scaffold0192; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 17 - 268
Target Start/End: Original strand, 19301 - 19557
Alignment:
| Q |
17 |
agatataaacggttcttaaaaagaacatagcatat-attagggagtattacacatttcc-aaatacttcttcgtacatgacatatagca----catcaat |
110 |
Q |
| |
|
||||| ||| |||| ||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||| | ||| | |||||| |
|
|
| T |
19301 |
agataaaaatggtttttaaagagaacatagcatattattagggagtattacacatttttgaaatacttcttcgtacacgacgt-tagaagtcgcatcaac |
19399 |
T |
|
| Q |
111 |
atcttcaccatcttcattaattatcaatattttcagtccttctctggatgtaattcttgagacagcgacatataattgtccatgcaaaaatacagacttt |
210 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||| | |||||| | |||||| |||||||||| ||| |
|
|
| T |
19400 |
atcttcaccatcttcattatttatcaatattttcagtatttctctggatgtaattcttgagatagcaaaatataactatccatgtgaaaatacagatttt |
19499 |
T |
|
| Q |
211 |
gggagatataatccaacatgtcacaatgattgcccttggctcttgtgaaaacaggtct |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19500 |
gggagatataatccaacatgtcacaatgattgccattggctcttgtgaaaacaggtct |
19557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 108; Significance: 3e-54; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 102 - 256
Target Start/End: Original strand, 24322886 - 24323043
Alignment:
| Q |
102 |
cacatcaatatcttcaccatcttcattaattatca---atattttcagtccttctctggatgtaattcttgagacagcgacatataattgtccatgcaaa |
198 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||| |||||||||| | ||||||||||||||||| ||| |
|
|
| T |
24322886 |
cacatcaatatcttcaccatcttcattatttatcaccaatattttcagtcattctctggatgtaactcttgagacatcaacatataattgtccatgtaaa |
24322985 |
T |
|
| Q |
199 |
aatacagactttgggagatataatccaacatgtcacaatgattgcccttggctcttgt |
256 |
Q |
| |
|
|||||| || |||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
24322986 |
aatacatacgttgggagatataatccaacatgtcgcaatgattgcccttggctcttgt |
24323043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 102 - 256
Target Start/End: Complemental strand, 41582529 - 41582375
Alignment:
| Q |
102 |
cacatcaatatcttcaccatcttcattaattatcaatattttcagtccttctctggatgtaattcttgagacagcgacatataattgtccatgcaaaaat |
201 |
Q |
| |
|
||||||||||||||| ||||||| ||| ||||||||||||||| ||||||||| ||||||| ||| || ||| | || |||| ||| ||| ||||| |
|
|
| T |
41582529 |
cacatcaatatcttctccatctttgttatttatcaatattttcaatccttctctagatgtaactctagatacaacaacgtatagctgttaatgtgaaaat |
41582430 |
T |
|
| Q |
202 |
acagactttgggagatataatccaacatgtcacaatgattgcccttggctcttgt |
256 |
Q |
| |
|
||| || ||||||| | || | ||||||| |||||||||||| || ||||||| |
|
|
| T |
41582429 |
acaaacgttgggaggaacaactccacatgtcgcaatgattgcccctgactcttgt |
41582375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 256
Target Start/End: Complemental strand, 28404918 - 28404772
Alignment:
| Q |
110 |
tatcttcaccatcttcattaattatcaatattttcagtccttctctggatgtaattcttgagacagcgacatataattgtccatgcaaaaatacagactt |
209 |
Q |
| |
|
|||| ||||||||||| | | |||||| |||||||| ||||||||||||||| ||| || ||| | |||||||| |||||||| |||| ||| | |
|
|
| T |
28404918 |
tatcctcaccatcttcgtcagttatcagtattttcaactcttctctggatgtaactctggaaacaaccacatataactgtccatgtgaaaagacatgggt |
28404819 |
T |
|
| Q |
210 |
tgggagatataatccaacatgtcacaatgattgcccttggctcttgt |
256 |
Q |
| |
|
|||||| |||| |||||||||| ||||| |||| ||||||||||| |
|
|
| T |
28404818 |
tgggaggtatacaccaacatgtcctaatgactgcctttggctcttgt |
28404772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 256
Target Start/End: Complemental strand, 16970025 - 16969907
Alignment:
| Q |
138 |
tattttcagtccttctctggatgtaattcttgagacagcgacatataattgtccatgcaaaaatacagactttgggagatataatccaacatgtcacaat |
237 |
Q |
| |
|
||||||||| |||||||| || |||| ||| || |||| |||||||| |||||||| |||| |||| | |||| || |||| |||||||||| | | |
|
|
| T |
16970025 |
tattttcaggccttctctagacgtaactctggaaacagtcacatataactgtccatgtgaaaacacaggcattggtaggtatacaccaacatgtccgagt |
16969926 |
T |
|
| Q |
238 |
gattgcccttggctcttgt |
256 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
16969925 |
gattgcccttggcttttgt |
16969907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 15993197 - 15993390
Alignment:
| Q |
19 |
atataaacggttcttaaaaagaacatagcatatattagggagtattacacatttccaaatacttcttcgtacatgacatatagca----catcaatatct |
114 |
Q |
| |
|
||||| || ||| ||||| ||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| || | ||| | ||||||||||| |
|
|
| T |
15993197 |
atatatacagtttttaaagagaacatagtatatattagggagtattacacatttcgaaatacttctttgtacacaacgt-tagaagtcgcatcaatatct |
15993295 |
T |
|
| Q |
115 |
tcaccatcttcattaattatcaatattttcagtccttctctggatgtaattcttgagacagcgacatataattgtccatgcaaaaatacagactt |
209 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||| |
|
|
| T |
15993296 |
tcaccatgttcattatttatcaatattttcagtccttctctggatgtaattcttgagacaggaacatataattgtccatgtgaaaatacaaactt |
15993390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 231
Target Start/End: Complemental strand, 17757800 - 17757679
Alignment:
| Q |
110 |
tatcttcaccatcttcattaattatcaatattttcagtccttctctggatgtaattcttgagacagcgacatataattgtccatgcaaaaatacagactt |
209 |
Q |
| |
|
|||||||||||||||||| | | ||||| || |||||||||||||| ||||||| |||||| ||| | ||||| || ||||| || ||||||||| | |
|
|
| T |
17757800 |
tatcttcaccatcttcatcagtgatcaacatcttcagtccttctctagatgtaactcttgaaacaacaacatacaactgtccgtgagaaaatacaggtgt |
17757701 |
T |
|
| Q |
210 |
tgggagatataatccaacatgt |
231 |
Q |
| |
|
||| ||||||| ||||||||| |
|
|
| T |
17757700 |
tggtagatatacaccaacatgt |
17757679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 231
Target Start/End: Complemental strand, 19059120 - 19058999
Alignment:
| Q |
110 |
tatcttcaccatcttcattaattatcaatattttcagtccttctctggatgtaattcttgagacagcgacatataattgtccatgcaaaaatacagactt |
209 |
Q |
| |
|
|||||||||||||||||| | | ||||| || |||||||||||||| ||||||| |||||| ||| | ||||| || ||||| || ||||||||| | |
|
|
| T |
19059120 |
tatcttcaccatcttcatcagtgatcaacatcttcagtccttctctagatgtaactcttgaaacaacaacatacaactgtccgtgagaaaatacaggtgt |
19059021 |
T |
|
| Q |
210 |
tgggagatataatccaacatgt |
231 |
Q |
| |
|
||| ||||||| ||||||||| |
|
|
| T |
19059020 |
tggtagatatacaccaacatgt |
19058999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 114 - 182
Target Start/End: Original strand, 53047206 - 53047274
Alignment:
| Q |
114 |
ttcaccatcttcattaattatcaatattttcagtccttctctggatgtaattcttgagacagcgacata |
182 |
Q |
| |
|
|||||||||||||| | | |||||||| || ||||||||||||||||||| |||||| ||||| ||||| |
|
|
| T |
53047206 |
ttcaccatcttcatcactgatcaatatatttagtccttctctggatgtaactcttgaaacagcaacata |
53047274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 205
Target Start/End: Complemental strand, 2702263 - 2702168
Alignment:
| Q |
110 |
tatcttcaccatcttcattaattatcaatattttcagtccttctctggatgtaattcttgagacagcgacatataattgtccatgcaaaaatacag |
205 |
Q |
| |
|
|||||| ||||||||||||| |||||||| || ||||||||||| ||||||| |||||| ||||| ||||| || ||||| || ||||||||| |
|
|
| T |
2702263 |
tatcttgaccatcttcattagcaatcaatatctttagtccttctctagatgtaactcttgaaacagcaacatacaactgtccgtgagaaaatacag |
2702168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 41862933 - 41863139
Alignment:
| Q |
17 |
agatataaacggttcttaaaaagaacatagcatatattagggagtattacacatttccaaatacttcttcgtacatgacatatag----cacatcaatat |
112 |
Q |
| |
|
||||||||||| || ||||| | ||||| ||||||||||||||||| ||||||||| ||||||||||||||| | | ||| ||| | |||||||| |
|
|
| T |
41862933 |
agatataaacgatttttaaagacgacataacatatattagggagtatcacacatttcaaaatacttcttcgtatacggcat-tagacgtcgtatcaatat |
41863031 |
T |
|
| Q |
113 |
cttcaccatcttcattaattatcaatattttcagtccttctctggatgtaattcttgagacagcgacatataattgtccatgcaaaaatacagactttgg |
212 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||| | ||||||||||||||||| |||||||||| |||| |
|
|
| T |
41863032 |
cttcaccatcttcatta-ttatcaatattttcagtctttctctggatgtaactcttgagacaacaacatataattgtccatgtgaaaatacagatgttgg |
41863130 |
T |
|
| Q |
213 |
gagatataa |
221 |
Q |
| |
|
||||||||| |
|
|
| T |
41863131 |
gagatataa |
41863139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 104 - 214
Target Start/End: Complemental strand, 9825729 - 9825619
Alignment:
| Q |
104 |
catcaatatcttcaccatcttcattaattatcaatattttcagtccttctctggatgtaattcttgagacagcgacatataattgtccatgcaaaaatac |
203 |
Q |
| |
|
|||| ||||||| ||||||||||||| | |||||||| ||||||| |||||||||||||| |||| | ||| | ||||||| |||||||| | ||||||| |
|
|
| T |
9825729 |
catccatatctttaccatcttcattattaatcaatatcttcagtcattctctggatgtaactctttatacaacaacatatagttgtccatacgaaaatac |
9825630 |
T |
|
| Q |
204 |
agactttggga |
214 |
Q |
| |
|
|| | |||||| |
|
|
| T |
9825629 |
agtcgttggga |
9825619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 110 - 231
Target Start/End: Complemental strand, 38685546 - 38685425
Alignment:
| Q |
110 |
tatcttcaccatcttcattaattatcaatattttcagtccttctctggatgtaattcttgagacagcgacatataattgtccatgcaaaaatacagactt |
209 |
Q |
| |
|
|||||||||||||||||| | | ||||||||||| ||||||||||||||||||| |||| | ||| | ||||| || ||| | || ||||||||| | | |
|
|
| T |
38685546 |
tatcttcaccatcttcatcagtgatcaatatttttagtccttctctggatgtaactctttaaacaacaacatacaactgttcgtgagaaaatacaggcgt |
38685447 |
T |
|
| Q |
210 |
tgggagatataatccaacatgt |
231 |
Q |
| |
|
||| |||||||| ||||||||| |
|
|
| T |
38685446 |
tggtagatataaaccaacatgt |
38685425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 110 - 231
Target Start/End: Original strand, 23480945 - 23481066
Alignment:
| Q |
110 |
tatcttcaccatcttcattaattatcaatattttcagtccttctctggatgtaattcttgagacagcgacatataattgtccatgcaaaaatacagactt |
209 |
Q |
| |
|
|||||||||||||||||| | | |||||||| || ||||||||||||||||||| |||||| | ||| ||||| || ||||| || ||||||||| | |
|
|
| T |
23480945 |
tatcttcaccatcttcatcagtgatcaatatctttagtccttctctggatgtaactcttgaaatagcaacatacaactgtccttgagaaaatacaggtgt |
23481044 |
T |
|
| Q |
210 |
tgggagatataatccaacatgt |
231 |
Q |
| |
|
||| ||||||| ||||||||| |
|
|
| T |
23481045 |
tggtagatatacaccaacatgt |
23481066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 176
Target Start/End: Complemental strand, 5429449 - 5429383
Alignment:
| Q |
110 |
tatcttcaccatcttcattaattatcaatattttcagtccttctctggatgtaattcttgagacagc |
176 |
Q |
| |
|
|||||||||||||||||| | | |||||||| || ||||||||||||||||||| |||||| ||||| |
|
|
| T |
5429449 |
tatcttcaccatcttcatcagtgatcaatatctttagtccttctctggatgtaactcttgaaacagc |
5429383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 6e-37; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 47 - 256
Target Start/End: Original strand, 43418416 - 43418628
Alignment:
| Q |
47 |
catatattagggagtattacacatttccaaatacttcttcgtacatgacat---atagcacatcaatatcttcaccatcttcattaattatcaatatttt |
143 |
Q |
| |
|
|||||||||||||| |||| ||||| | ||||||||||||||||| ||| | | | |||||||||||| ||||||||||| |||||| |||||| |
|
|
| T |
43418416 |
catatattagggagcattaaacattgcgaaatacttcttcgtacacgacgttagacggtgcatcaatatctttgtcatcttcattatttatcagtatttt |
43418515 |
T |
|
| Q |
144 |
cagtccttctctggatgtaattcttgagacagcgacatataattgtccatgcaaaaatacagactttgggagatataatccaacatgtcacaatgattgc |
243 |
Q |
| |
|
|| |||||||||||| |||| |||||||||||| |||||||||||| |||| |||||||| || | | ||||| |||||||||||| |||||||||| |
|
|
| T |
43418516 |
caatccttctctggaggtaactcttgagacagcaacatataattgttcatgtgaaaatacatacgtcagaagataaaatccaacatgtttcaatgattgc |
43418615 |
T |
|
| Q |
244 |
ccttggctcttgt |
256 |
Q |
| |
|
||||||||||||| |
|
|
| T |
43418616 |
ccttggctcttgt |
43418628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 205
Target Start/End: Complemental strand, 1852322 - 1852227
Alignment:
| Q |
110 |
tatcttcaccatcttcattaattatcaatattttcagtccttctctggatgtaattcttgagacagcgacatataattgtccatgcaaaaatacag |
205 |
Q |
| |
|
|||||||||||||||||||| | ||||||| || ||||||||||| ||||||| |||||| ||| | ||||| || |||||||| ||||||||| |
|
|
| T |
1852322 |
tatcttcaccatcttcattagtgttcaatatctttagtccttctcttgatgtaactcttgaaacaacaacatacaactgtccatgagaaaatacag |
1852227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 110 - 182
Target Start/End: Complemental strand, 1199647 - 1199575
Alignment:
| Q |
110 |
tatcttcaccatcttcattaattatcaatattttcagtccttctctggatgtaattcttgagacagcgacata |
182 |
Q |
| |
|
|||||||||||||||||| | | |||||||| || ||| ||||||||||||||| |||||| ||||| ||||| |
|
|
| T |
1199647 |
tatcttcaccatcttcatcagtgatcaatatctttagtacttctctggatgtaactcttgaaacagcaacata |
1199575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 191
Target Start/End: Original strand, 604155 - 604236
Alignment:
| Q |
110 |
tatcttcaccatcttcattaattatcaatattttcagtccttctctggatgtaattcttgagacagcgacatataattgtcc |
191 |
Q |
| |
|
|||||||||||||||||| | | |||||||| || | ||||||| ||||||||| |||||| ||||| ||||| || ||||| |
|
|
| T |
604155 |
tatcttcaccatcttcatcagtgatcaatatctttaatccttctttggatgtaactcttgaaacagcaacatacaactgtcc |
604236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 194
Target Start/End: Original strand, 5241195 - 5241283
Alignment:
| Q |
105 |
atcaatatcttcaccatcttcattaattatcaatattttcagtccttctctggatgtaattcttgagacagcgacatataattgtccatg |
194 |
Q |
| |
|
|||||||||||||||||||| || | |||||||||| || ||||| |||||||| || |||||| |||| ||||||| ||||||||| |
|
|
| T |
5241195 |
atcaatatcttcaccatctt-atcagttatcaatatctttgatccttttctggatgcaactcttgatacagtaacatatagttgtccatg |
5241283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 170
Target Start/End: Complemental strand, 1851176 - 1851116
Alignment:
| Q |
110 |
tatcttcaccatcttcattaattatcaatattttcagtccttctctggatgtaattcttga |
170 |
Q |
| |
|
|||||||||||||||||| | ||||||||| || ||| ||||||| ||||||| |||||| |
|
|
| T |
1851176 |
tatcttcaccatcttcatcagatatcaatatctttagttcttctcttgatgtaactcttga |
1851116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 256
Target Start/End: Complemental strand, 33315783 - 33315545
Alignment:
| Q |
21 |
ataaacggttcttaaaaagaacatagcatatattagggagtattacacatttccaaatacttcttcgtacatgacatatag----cacatcaatatcttc |
116 |
Q |
| |
|
|||||||||| |||| | |||||||||||||||| | | ||||| ||||||| ||||| ||||||||||| ||||| ||| |||||||| |||||| |
|
|
| T |
33315783 |
ataaacggtttttaatgacaacatagcatatattatgaaatattatacatttcgaaatatttcttcgtacacgacat-tagacgtcacatcaacatcttc |
33315685 |
T |
|
| Q |
117 |
accatcttcattaattatcaatattttcagtccttctctggatgtaattcttgagacagcgacatataattgtccatgcaaaaatacagactttgggaga |
216 |
Q |
| |
|
|| ||||||||||||||||||||| ||| |||||||||||||||| ||||||||| || | |||||||| |||||| |||||| | | ||| ||| |
|
|
| T |
33315684 |
acaatcttcattaattatcaatatcttcgacccttctctggatgtaactcttgagacggcaatatataattctccatgtgaaaatattggcgttgaaaga |
33315585 |
T |
|
| Q |
217 |
tataatccaacatgtcacaatgattgcccttggctcttgt |
256 |
Q |
| |
|
|||||||||||||||| || | ||| ||||| |||||||| |
|
|
| T |
33315584 |
tataatccaacatgtcgcagtaatttcccttagctcttgt |
33315545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 110 - 205
Target Start/End: Complemental strand, 29968363 - 29968268
Alignment:
| Q |
110 |
tatcttcaccatcttcattaattatcaatattttcagtccttctctggatgtaattcttgagacagcgacatataattgtccatgcaaaaatacag |
205 |
Q |
| |
|
|||||||||||||||||| | | ||||||||||| ||||||||| ||||||||| |||||| ||| | ||||| |||||||| || ||||||||| |
|
|
| T |
29968363 |
tatcttcaccatcttcatcagtgatcaatatttttagtccttctttggatgtaactcttgaaacaacaacatacaattgtccgtgagaaaatacag |
29968268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 102 - 169
Target Start/End: Original strand, 47965955 - 47966022
Alignment:
| Q |
102 |
cacatcaatatcttcaccatcttcattaattatcaatattttcagtccttctctggatgtaattcttg |
169 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| || ||| ||||||| ||||||| ||||| |
|
|
| T |
47965955 |
cacatcaatatcttcaccatcttcattagttatcaatatctttagttcttctctagatgtaactcttg |
47966022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 54 - 231
Target Start/End: Original strand, 49200166 - 49200346
Alignment:
| Q |
54 |
tagggagtattacacatttccaaatacttcttcgtacatgacatatag----cacatcaatatcttcaccatcttcattaattatcaatattttcagtcc |
149 |
Q |
| |
|
||||| ||||||||||||| |||||||||||| |||| ||| | ||| | |||| |||||||||| |||||||||| | |||||||| |||||||| |
|
|
| T |
49200166 |
tagggggtattacacattttgaaatacttcttcatacacgacgt-tagacgtctcatccatatcttcacaatcttcattattaatcaatatcttcagtcc |
49200264 |
T |
|
| Q |
150 |
ttctctggatgtaattcttgagacagcgacatataattgtccatgcaaaaatacagactttgggagatataatccaacatgt |
231 |
Q |
| |
|
||||||||||| || |||| | ||| | |||| |||||| ||| |||||||| | ||||||||||| |||||||||| |
|
|
| T |
49200265 |
ttctctggatgcaactctttatacaacattgtatagttgtccgtgcgaaaatacatgcgttgggagatattgtccaacatgt |
49200346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 231
Target Start/End: Original strand, 47428065 - 47428186
Alignment:
| Q |
110 |
tatcttcaccatcttcattaattatcaatattttcagtccttctctggatgtaattcttgagacagcgacatataattgtccatgcaaaaatacagactt |
209 |
Q |
| |
|
|||||||||||||||||| | | |||||||| | ||||||||| ||||||||| |||||| ||| | ||||| || ||||| || |||||||||| | |
|
|
| T |
47428065 |
tatcttcaccatcttcatcagtgatcaatatctatagtccttctttggatgtaactcttgaaacaacaacatacaactgtccgtgaaaaaatacaggtgt |
47428164 |
T |
|
| Q |
210 |
tgggagatataatccaacatgt |
231 |
Q |
| |
|
||| ||||||| ||||||||| |
|
|
| T |
47428165 |
tggtagatatacaccaacatgt |
47428186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 175
Target Start/End: Original strand, 2479322 - 2479387
Alignment:
| Q |
110 |
tatcttcaccatcttcattaattatcaatattttcagtccttctctggatgtaattcttgagacag |
175 |
Q |
| |
|
|||||||||||||||||| | | |||||||| || |||| |||||||||||||| |||||| |||| |
|
|
| T |
2479322 |
tatcttcaccatcttcatcagtaatcaatatctttagtcattctctggatgtaactcttgaaacag |
2479387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 161
Target Start/End: Complemental strand, 24050736 - 24050685
Alignment:
| Q |
110 |
tatcttcaccatcttcattaattatcaatattttcagtccttctctggatgt |
161 |
Q |
| |
|
|||||||||||||||||| | | |||||||| || ||||||||||||||||| |
|
|
| T |
24050736 |
tatcttcaccatcttcatcagtgatcaatatctttagtccttctctggatgt |
24050685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 8e-27; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 21 - 169
Target Start/End: Original strand, 11298654 - 11298805
Alignment:
| Q |
21 |
ataaacggttcttaaaaagaacatagcatatattagggagtattacacatttccaaatacttcttcgtacatgacat---atagcacatcaatatcttca |
117 |
Q |
| |
|
|||||||||| |||| | |||||| ||||||||| | | ||||||||||||| ||||||||||| ||||| ||||| || |||||||||||||||| |
|
|
| T |
11298654 |
ataaacggtttttaatgacaacataacatatattatgaaatattacacatttcaaaatacttctttgtacacgacattatatgtcacatcaatatcttca |
11298753 |
T |
|
| Q |
118 |
ccatcttcattaattatcaatattttcagtccttctctggatgtaattcttg |
169 |
Q |
| |
|
|| ||||||||| |||||||||| || ||||||||||| ||||||| ||||| |
|
|
| T |
11298754 |
ccgtcttcattagttatcaatatctttagtccttctctagatgtaactcttg |
11298805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 6701973 - 6701899
Alignment:
| Q |
17 |
agatataaacggttcttaaaaagaacatagcatatattagggagtattacacatttccaaatacttcttcgtaca |
91 |
Q |
| |
|
|||||||||| ||| ||||| | ||||||||||||||||||||||||| |||||||| |||||||||||| |||| |
|
|
| T |
6701973 |
agatataaacagttgttaaagacaacatagcatatattagggagtattgcacatttcaaaatacttcttcataca |
6701899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 110 - 231
Target Start/End: Complemental strand, 19123300 - 19123179
Alignment:
| Q |
110 |
tatcttcaccatcttcattaattatcaatattttcagtccttctctggatgtaattcttgagacagcgacatataattgtccatgcaaaaatacagactt |
209 |
Q |
| |
|
|||||||||||||||||| ||| |||||||| || ||||||||||||||| ||| |||||| ||||| ||||| || ||||| || ||||||||| | |
|
|
| T |
19123300 |
tatcttcaccatcttcatcaatgatcaatatctttagtccttctctggatataactcttgaaacagcaacatacaactgtccgtgagaaaatacaggtgt |
19123201 |
T |
|
| Q |
210 |
tgggagatataatccaacatgt |
231 |
Q |
| |
|
||| ||||||| ||||||||| |
|
|
| T |
19123200 |
tggtagatatacaccaacatgt |
19123179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 163
Target Start/End: Complemental strand, 37340215 - 37340092
Alignment:
| Q |
40 |
aacatagcatatattagggagtattacacatttccaaatacttcttcgtacatgacat---atagcacatcaatatcttcaccatcttcattaattatca |
136 |
Q |
| |
|
|||||| ||||||||| | ||||||||||||| ||||||||||| |||| ||||| || |||||||||||||||| ||||||| | |||||| |
|
|
| T |
37340215 |
aacataacatatattattaaatattacacatttcgaaatacttctttatacacgacattagatgtcacatcaatatcttca---tcttcataagttatca |
37340119 |
T |
|
| Q |
137 |
atattttcagtccttctctggatgtaa |
163 |
Q |
| |
|
|||| |||||||||||||| ||||||| |
|
|
| T |
37340118 |
atatcttcagtccttctctagatgtaa |
37340092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 191
Target Start/End: Original strand, 31486278 - 31486359
Alignment:
| Q |
110 |
tatcttcaccatcttcattaattatcaatattttcagtccttctctggatgtaattcttgagacagcgacatataattgtcc |
191 |
Q |
| |
|
|||||||||||||||||| | | |||||||| || ||||||||||||||||||| |||||| | ||| ||||| || ||||| |
|
|
| T |
31486278 |
tatcttcaccatcttcatcagtgatcaatatctttagtccttctctggatgtaactcttgaaaaagcaacatacaactgtcc |
31486359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 205
Target Start/End: Original strand, 14164496 - 14164591
Alignment:
| Q |
110 |
tatcttcaccatcttcattaattatcaatattttcagtccttctctggatgtaattcttgagacagcgacatataattgtccatgcaaaaatacag |
205 |
Q |
| |
|
|||||||||||||||||| | |||||||| || ||||||||||||||||||| | |||| ||||| ||||| || ||||| || ||||||||| |
|
|
| T |
14164496 |
tatcttcaccatcttcatcagcgatcaatatctttagtccttctctggatgtaacttttgaaacagcaacatacaactgtccgtgagaaaatacag |
14164591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 205
Target Start/End: Original strand, 31487296 - 31487388
Alignment:
| Q |
113 |
cttcaccatcttcattaattatcaatattttcagtccttctctggatgtaattcttgagacagcgacatataattgtccatgcaaaaatacag |
205 |
Q |
| |
|
||||||||||||||| | | |||||||| || ||||||||| ||||||||| |||||| ||| | ||||| || ||||| || ||||||||| |
|
|
| T |
31487296 |
cttcaccatcttcatcagtgatcaatatctttagtccttctttggatgtaactcttgaaacaacaacatacaactgtccgtgagaaaatacag |
31487388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1155 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold1155
Description:
Target: scaffold1155; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 110 - 231
Target Start/End: Original strand, 771 - 892
Alignment:
| Q |
110 |
tatcttcaccatcttcattaattatcaatattttcagtccttctctggatgtaattcttgagacagcgacatataattgtccatgcaaaaatacagactt |
209 |
Q |
| |
|
|||||||||||||||||| | | |||||||| || |||| ||||| |||||||| |||||| ||||| ||||| |||||||| || |||||||||| | |
|
|
| T |
771 |
tatcttcaccatcttcatcagtgatcaatatctttagtcattctccggatgtaactcttgaaacagcaacatacaattgtccgtgagaaaatacagatgt |
870 |
T |
|
| Q |
210 |
tgggagatataatccaacatgt |
231 |
Q |
| |
|
||| ||||||| ||||||||| |
|
|
| T |
871 |
tggtagatatacaccaacatgt |
892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 110 - 231
Target Start/End: Complemental strand, 9446 - 9325
Alignment:
| Q |
110 |
tatcttcaccatcttcattaattatcaatattttcagtccttctctggatgtaattcttgagacagcgacatataattgtccatgcaaaaatacagactt |
209 |
Q |
| |
|
|||||||||||||||||| | | |||||||| || |||| ||||| |||||||| |||||| ||||| ||||| |||||||| || |||||||||| | |
|
|
| T |
9446 |
tatcttcaccatcttcatcagtgatcaatatctttagtcattctccggatgtaactcttgaaacagcaacatacaattgtccgtgagaaaatacagatgt |
9347 |
T |
|
| Q |
210 |
tgggagatataatccaacatgt |
231 |
Q |
| |
|
||| ||||||| ||||||||| |
|
|
| T |
9346 |
tggtagatatacaccaacatgt |
9325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 110 - 231
Target Start/End: Original strand, 29534 - 29655
Alignment:
| Q |
110 |
tatcttcaccatcttcattaattatcaatattttcagtccttctctggatgtaattcttgagacagcgacatataattgtccatgcaaaaatacagactt |
209 |
Q |
| |
|
|||||||||||||||||| | | |||||||| || |||| ||||| |||||||| |||||| ||||| ||||| |||||||| || |||||||||| | |
|
|
| T |
29534 |
tatcttcaccatcttcatcagtgatcaatatctttagtcattctccggatgtaactcttgaaacagcaacatacaattgtccgtgagaaaatacagatgt |
29633 |
T |
|
| Q |
210 |
tgggagatataatccaacatgt |
231 |
Q |
| |
|
||| ||||||| ||||||||| |
|
|
| T |
29634 |
tggtagatatacaccaacatgt |
29655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 110 - 231
Target Start/End: Original strand, 11642413 - 11642534
Alignment:
| Q |
110 |
tatcttcaccatcttcattaattatcaatattttcagtccttctctggatgtaattcttgagacagcgacatataattgtccatgcaaaaatacagactt |
209 |
Q |
| |
|
|||||||||||| ||||| | | |||||||| || ||||||||||||||||||| |||||| ||||| ||||| || ||||| || ||||||||| | |
|
|
| T |
11642413 |
tatcttcaccattttcatcagtgatcaatatatttagtccttctctggatgtaactcttgaaacagcaacatacaactgtccgtgagaaaatacaggtgt |
11642512 |
T |
|
| Q |
210 |
tgggagatataatccaacatgt |
231 |
Q |
| |
|
||| ||||||| ||||||||| |
|
|
| T |
11642513 |
tggtagatatacaccaacatgt |
11642534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 110 - 231
Target Start/End: Original strand, 16375727 - 16375848
Alignment:
| Q |
110 |
tatcttcaccatcttcattaattatcaatattttcagtccttctctggatgtaattcttgagacagcgacatataattgtccatgcaaaaatacagactt |
209 |
Q |
| |
|
|||||||||||||||||| | | |||||||| || ||||||||||||||||||| |||||| ||| | |||| |||||||| || ||||||||| | |
|
|
| T |
16375727 |
tatcttcaccatcttcatcagtgatcaatatctttagtccttctctggatgtaactcttgaaacaacatcatacaattgtccttgagaaaatacaggtgt |
16375826 |
T |
|
| Q |
210 |
tgggagatataatccaacatgt |
231 |
Q |
| |
|
||| ||||||| ||||||||| |
|
|
| T |
16375827 |
tggtagatatacaccaacatgt |
16375848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 230
Target Start/End: Original strand, 9141280 - 9141400
Alignment:
| Q |
110 |
tatcttcaccatcttcattaattatcaatattttcagtccttctctggatgtaattcttgagacagcgacatataattgtccatgcaaaaatacagactt |
209 |
Q |
| |
|
||||||||||||| |||| ||| |||||||| || ||||||||||| ||||||| | |||| ||||| ||||| || |||||||| ||||||||| | |
|
|
| T |
9141280 |
tatcttcaccatcatcatcaatgatcaatatctttagtccttctctagatgtaacttttgaaacagcaacatagaaatgtccatgagaaaatacaggtgt |
9141379 |
T |
|
| Q |
210 |
tgggagatataatccaacatg |
230 |
Q |
| |
|
||| ||||||| |||||||| |
|
|
| T |
9141380 |
tggtagatatacaccaacatg |
9141400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 231
Target Start/End: Complemental strand, 45286560 - 45286439
Alignment:
| Q |
110 |
tatcttcaccatcttcattaattatcaatattttcagtccttctctggatgtaattcttgagacagcgacatataattgtccatgcaaaaatacagactt |
209 |
Q |
| |
|
|||||||| ||||||||| | | |||||||| || ||||||||||||||||||| |||||| ||| | ||||| || ||||| || ||||||||| | |
|
|
| T |
45286560 |
tatcttcatcatcttcatcagtgatcaatatctttagtccttctctggatgtaactcttgaaacaacaacatacaactgtccgtgagaaaatacaggtgt |
45286461 |
T |
|
| Q |
210 |
tgggagatataatccaacatgt |
231 |
Q |
| |
|
||| ||||||| ||||||||| |
|
|
| T |
45286460 |
tggtagatatacaccaacatgt |
45286439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 189
Target Start/End: Original strand, 39263043 - 39263123
Alignment:
| Q |
109 |
atatcttcaccatcttcattaattatcaatattttcagtccttctctggatgtaattcttgagacagcgacatataattgt |
189 |
Q |
| |
|
||||||| | ||||||||| | |||| | ||| ||||| ||||||||||||||| ||| || ||||| |||||||||||| |
|
|
| T |
39263043 |
atatctttatcatcttcatcagttattagtatcttcagctcttctctggatgtaactctagaaacagccacatataattgt |
39263123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 45823819 - 45823731
Alignment:
| Q |
160 |
gtaattcttgagacagcgacatataattgtccatgcaaaaatacagactttgggagatataatccaacatgtcacaatgattgcccttg |
248 |
Q |
| |
|
|||| |||||| ||||| |||||||| |||||||| ||||||||| | |||| || |||| |||||||||| | |||||||||||| |
|
|
| T |
45823819 |
gtaactcttgaaacagctacatataactgtccatgagaaaatacaggcgttggtaggtatacaccaacatgtccgagtgattgcccttg |
45823731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 162
Target Start/End: Original strand, 48639488 - 48639540
Alignment:
| Q |
110 |
tatcttcaccatcttcattaattatcaatattttcagtccttctctggatgta |
162 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| || |||| ||||||||||||| |
|
|
| T |
48639488 |
tatcttcaccatcttcatcaatgttcaatatctttagtcattctctggatgta |
48639540 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 20910957 - 20911030
Alignment:
| Q |
17 |
agatataaacggttcttaaaaagaacatagcatatattagggagtattacacatttccaaatacttcttcgtaca |
91 |
Q |
| |
|
||||| |||||||| ||||| | |||||||||||||||||||||| |||||| |||| |||||||||||| |||| |
|
|
| T |
20910957 |
agatacaaacggtttttaaagacaacatagcatatattagggagt-ttacacgtttcgaaatacttcttcataca |
20911030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 20925405 - 20925478
Alignment:
| Q |
17 |
agatataaacggttcttaaaaagaacatagcatatattagggagtattacacatttccaaatacttcttcgtaca |
91 |
Q |
| |
|
||||| |||||||| ||||| | |||||||||||||||||||||| |||||| |||| |||||||||||| |||| |
|
|
| T |
20925405 |
agatacaaacggtttttaaagacaacatagcatatattagggagt-ttacacgtttcgaaatacttcttcataca |
20925478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 163
Target Start/End: Complemental strand, 15298228 - 15298167
Alignment:
| Q |
102 |
cacatcaatatcttcaccatcttcattaattatcaatattttcagtccttctctggatgtaa |
163 |
Q |
| |
|
||||| |||||||||||||||||||| | | |||||||| |||||||||||||| ||||||| |
|
|
| T |
15298228 |
cacattaatatcttcaccatcttcataagtaatcaatatattcagtccttctctagatgtaa |
15298167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 170
Target Start/End: Complemental strand, 1394158 - 1394098
Alignment:
| Q |
110 |
tatcttcaccatcttcattaattatcaatattttcagtccttctctggatgtaattcttga |
170 |
Q |
| |
|
|||||||||||||||||| | | |||||||| || ||||||||||| ||||||| |||||| |
|
|
| T |
1394158 |
tatcttcaccatcttcatcagtgatcaatatatttagtccttctctagatgtaactcttga |
1394098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 194
Target Start/End: Complemental strand, 7018481 - 7018397
Alignment:
| Q |
110 |
tatcttcaccatcttcattaattatcaatattttcagtccttctctggatgtaattcttgagacagcgacatataattgtccatg |
194 |
Q |
| |
|
|||||||||||||||||| |||||||| ||| |||| | |||||||||||||| | | || ||| | |||| |||||||||||| |
|
|
| T |
7018481 |
tatcttcaccatcttcatcaattatcagtatcttcaaccattctctggatgtaactttggaaacaaccacatgtaattgtccatg |
7018397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 231
Target Start/End: Complemental strand, 104776 - 104655
Alignment:
| Q |
110 |
tatcttcaccatcttcattaattatcaatattttcagtccttctctggatgtaattcttgagacagcgacatataattgtccatgcaaaaatacagactt |
209 |
Q |
| |
|
|||||||||||||||||| | | |||||||| || ||||||||||||||||| | |||||| ||| ||||| || ||||| || ||||||||| | |
|
|
| T |
104776 |
tatcttcaccatcttcatcagtgatcaatatctttagtccttctctggatgttactcttgaaacaataacatacaactgtccgtgagaaaatacaggtgt |
104677 |
T |
|
| Q |
210 |
tgggagatataatccaacatgt |
231 |
Q |
| |
|
||| ||||||| ||||||||| |
|
|
| T |
104676 |
tggtagatatacaccaacatgt |
104655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 170
Target Start/End: Complemental strand, 127425 - 127365
Alignment:
| Q |
110 |
tatcttcaccatcttcattaattatcaatattttcagtccttctctggatgtaattcttga |
170 |
Q |
| |
|
|||||||||||||||| | | | |||||||| || ||||||||||||||||| | |||||| |
|
|
| T |
127425 |
tatcttcaccatcttcgtcagtgatcaatatctttagtccttctctggatgttactcttga |
127365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 71289 - 71349
Alignment:
| Q |
110 |
tatcttcaccatcttcattaattatcaatattttcagtccttctctggatgtaattcttga |
170 |
Q |
| |
|
|||||||||||||||||| | | |||||||| || |||| |||||||||||| | |||||| |
|
|
| T |
71289 |
tatcttcaccatcttcatcagtgatcaatatctttagtctttctctggatgttactcttga |
71349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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