View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3778_low_1 (Length: 599)
Name: NF3778_low_1
Description: NF3778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3778_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 244 - 581
Target Start/End: Original strand, 10594791 - 10595129
Alignment:
| Q |
244 |
atatccaaagacagtattacatgcatacatttaatcaaatttacaccatcaaaagctatgaagcactgatacagacaacagacacagacaataataaaaa |
343 |
Q |
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| T |
10594791 |
atattcaaacacagtattacatgcatacatttaatcacatttacaccatcaaaagctatgaagcactgatacagacaacagacacagacactaataaaaa |
10594890 |
T |
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| Q |
344 |
tttaaaaaatgaattaatttaaggtaatcacacatgtcagtgttaagacatccgacatttgtcggacaccagacatatcttctatcaaaattgtcgatgc |
443 |
Q |
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| T |
10594891 |
tttaaaaaatgaattaatttaaagtaatcacacatgtcagtgtt-------------------ggacaccagacatatcttctatcaaaattgtcgatgc |
10594971 |
T |
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| Q |
444 |
tacattcatcaaaaccaactagagtacaaaaac--agacaaaaatcac-------------nnnnnnnnctccttcataatttgt-----tatgtaacta |
523 |
Q |
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| T |
10594972 |
tacattcatcaaagccaactagagtacaaaaacagagacaaaaatcaccttttttttttttttttttttttccttcataatttgttatgttatgtaacta |
10595071 |
T |
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| Q |
524 |
aataaataatacaaacagaagcaacattggatagataaattatacctattggaatagg |
581 |
Q |
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| T |
10595072 |
aataaataatacaaacagaagcaacattggatacataaagtatacctattggaatagg |
10595129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 10594609 - 10594796
Alignment:
| Q |
1 |
atctgatcagccaagcaaatgacttctgaaaaatctaaattttttactaatgatagccaactcataaaggaacaaaatgcaattgttctcgtttgaaaat |
100 |
Q |
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| T |
10594609 |
atctgatcagataagcaaatgacttctgaaaaatctaaattttttactattgatagccaactcatagacaaacaaaatgcgattgttctcgtttgaaaat |
10594708 |
T |
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| Q |
101 |
tcaacgccaagaattcaagtaaaaacgcatacttagactgatttacacggcattttccaacaatacccaattttcactacatatattc |
188 |
Q |
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| T |
10594709 |
tcaacgccaagaattcaagtaaaaacgcatacttagactgatttacacggcattttccaacaatacccaattttcactacatatattc |
10594796 |
T |
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