View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3778_low_11 (Length: 214)

Name: NF3778_low_11
Description: NF3778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3778_low_11
NF3778_low_11
[»] chr6 (16 HSPs)
chr6 (1-206)||(13861287-13861492)
chr6 (1-206)||(14026594-14026799)
chr6 (1-154)||(14016685-14016838)
chr6 (1-154)||(14112081-14112234)
chr6 (1-154)||(13942669-13942822)
chr6 (1-154)||(13471304-13471457)
chr6 (1-154)||(14086272-14086425)
chr6 (1-154)||(13891311-13891464)
chr6 (117-206)||(13891580-13891669)
chr6 (117-206)||(14111876-14111965)
chr6 (102-206)||(14086067-14086171)
chr6 (102-211)||(14016475-14016584)
chr6 (105-206)||(13873864-13873965)
chr6 (117-206)||(13942464-13942553)
chr6 (55-154)||(14048819-14048918)
chr6 (117-184)||(13471573-13471640)


Alignment Details
Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 13861287 - 13861492
Alignment:
Q  1 cctttctgatcattttatccattcattgagtcaatccaagttcagcttttccaattctctttctatccttgatctctctgaaaataactttatgtcatct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  || |||||| |||||||     
T  13861287 cctttctgatcattttatccattcattgagtcaatccaagttcaacttttccaattctctttctatccttgatctctctgtgaacaactttgtgtcatcc 13861386  T
Q  101 ttgatattcgagtgggtgtcaaacataagttccaatcttgttgagcttgacctttctttaaacttcttggaggctcctccatcaattgactatggcatag 200  Q
     ||||||||  || | ||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||    
T  13861387 atgatattcccgttgttgtcaaacataagttccaatcttgttgagcttgacctttctttcaaccacttggaggctcctccatcaattgactatggcatag 13861486  T
Q  201 tgatga 206  Q
    ||||||    
T  13861487 tgatga 13861492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 14026799 - 14026594
Alignment:
Q  1 cctttctgatcattttatccattcattgagtcaatccaagttcagcttttccaattctctttctatccttgatctctctgaaaataactttatgtcatct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||| ||||| ||  |||||   |||||     
T  14026799 cctttctgatcattttatccattcattgagtcaatccaagttcaacttttccacttccctttctatccttgatctatctgataaccactttgcatcatcc 14026700  T
Q  101 ttgatattcgagtgggtgtcaaacataagttccaatcttgttgagcttgacctttctttaaacttcttggaggctcctccatcaattgactatggcatag 200  Q
    ||||||||| | |||||||||||||||||||||||||||||  |||||||||||||| | ||| | ||||||| ||||||||||  ||  ||||||| ||    
T  14026699 ttgatattccattgggtgtcaaacataagttccaatcttgtaaagcttgacctttctatgaaccttttggaggatcctccatcatatggttatggcacag 14026600  T
Q  201 tgatga 206  Q
    ||||||    
T  14026599 tgatga 14026594  T

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Target: chr6; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 14016838 - 14016685
Alignment:
Q  1 cctttctgatcattttatccattcattgagtcaatccaagttcagcttttccaattctctttctatccttgatctctctgaaaataactttatgtcatct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| || || ||||||   |||||     
T  14016838 cctttctgatcattttatccattcattgagtcaatccaagttcaacttttccacttctctttctatccttgatctctccgataacaactttgcatcatcc 14016739  T
Q  101 ttgatattcgagtgggtgtcaaacataagttccaatcttgttgagcttgacctt 154  Q
    ||||||||| | |||||||||||||||||| | |||||||||||||||||||||    
T  14016738 ttgatattccattgggtgtcaaacataagtgctaatcttgttgagcttgacctt 14016685  T

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Target: chr6; HSP #4
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 14112234 - 14112081
Alignment:
Q  1 cctttctgatcattttatccattcattgagtcaatccaagttcagcttttccaattctctttctatccttgatctctctgaaaataactttatgtcatct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||   ||  |||||| |||||||    
T  14112234 cctttctgatcattttatccattcattgagtcaatccaagttcaacttttccaattctctttcaatccttgatctttctttgaactactttacgtcatct 14112135  T
Q  101 ttgatattcgagtgggtgtcaaacataagttccaatcttgttgagcttgacctt 154  Q
    |||||||| ||||||||||||||||||||||||||||||||   ||||||||||    
T  14112134 ttgatatttgagtgggtgtcaaacataagttccaatcttgtaaggcttgacctt 14112081  T

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Target: chr6; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 13942822 - 13942669
Alignment:
Q  1 cctttctgatcattttatccattcattgagtcaatccaagttcagcttttccaattctctttctatccttgatctctctgaaaataactttatgtcatct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||   || ||||||   |||||     
T  13942822 cctttctgatcattttatccattcattgagtcaatccaagttcaacttttcaacttctctttctatccttgatctctcttggaacaactttgcatcatcc 13942723  T
Q  101 ttgatattcgagtgggtgtcaaacataagttccaatcttgttgagcttgacctt 154  Q
    ||||||||| | |||||||||||||||||||| |||||||||||||||||||||    
T  13942722 ttgatattccaatgggtgtcaaacataagttctaatcttgttgagcttgacctt 13942669  T

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Target: chr6; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 13471304 - 13471457
Alignment:
Q  1 cctttctgatcattttatccattcattgagtcaatccaagttcagcttttccaattctctttctatccttgatctctctgaaaataactttatgtcatct 100  Q
    |||||||||||||||| ||||||| |||||||||||||||||||  ||||||| |||||||||||||||||||||||||   || || ||| |||||||     
T  13471304 cctttctgatcattttgtccattccttgagtcaatccaagttcaaattttccacttctctttctatccttgatctctctcggaacaaatttgtgtcatca 13471403  T
Q  101 ttgatattcgagtgggtgtcaaacataagttccaatcttgttgagcttgacctt 154  Q
    ||||||||  |   ||||||||||||||||||||||||||||||||||||||||    
T  13471404 ttgatatttcatatggtgtcaaacataagttccaatcttgttgagcttgacctt 13471457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 14086425 - 14086272
Alignment:
Q  1 cctttctgatcattttatccattcattgagtcaatccaagttcagcttttccaattctctttctatccttgatctctctgaaaataactttatgtcatct 100  Q
    ||||||| ||||||| ||||||||  |||||||||||||||||| |||||||| ||||||||||||||| |||||||||   || | ||||   ||||||    
T  14086425 cctttcttatcatttcatccattccctgagtcaatccaagttcaacttttccacttctctttctatcctcgatctctcttggaacagctttgcttcatct 14086326  T
Q  101 ttgatattcgagtgggtgtcaaacataagttccaatcttgttgagcttgacctt 154  Q
    ||||||||| ||||||||||||||||||||||||||||||||  ||||||||||    
T  14086325 ttgatattccagtgggtgtcaaacataagttccaatcttgttttgcttgacctt 14086272  T

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Target: chr6; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 13891311 - 13891464
Alignment:
Q  1 cctttctgatcattttatccattcattgagtcaatccaagttcagcttttccaattctctttctatccttgatctctctgaaaataactttatgtcatct 100  Q
    |||||||||||||||||||||||| |||||| |||| |||||||  |||||||  ||||||||||||||||||||||||   || |||||    ||||||    
T  13891311 cctttctgatcattttatccattctttgagtaaatcgaagttcaatttttccacatctctttctatccttgatctctcttcgaacaacttcgcatcatct 13891410  T
Q  101 ttgatattcgagtgggtgtcaaacataagttccaatcttgttgagcttgacctt 154  Q
    ||||||||| |||||||||||||||| ||| ||||||||||   ||||||||||    
T  13891411 ttgatattccagtgggtgtcaaacattagtcccaatcttgtaaggcttgacctt 13891464  T

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Target: chr6; HSP #9
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 117 - 206
Target Start/End: Original strand, 13891580 - 13891669
Alignment:
Q  117 tgtcaaacataagttccaatcttgttgagcttgacctttctttaaacttcttggaggctcctccatcaattgactatggcatagtgatga 206  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| | || ||||||| |||||||||    
T  13891580 tgtcaaacataagttccaatcttgttaaacttgacctttctttaaacttcttggaggctcctccatccaatgtctatggcttagtgatga 13891669  T

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Target: chr6; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 117 - 206
Target Start/End: Complemental strand, 14111965 - 14111876
Alignment:
Q  117 tgtcaaacataagttccaatcttgttgagcttgacctttctttaaacttcttggaggctcctccatcaattgactatggcatagtgatga 206  Q
    |||||||||||||||  |||||||||||||||||||||||| | |||  |||||||||||||||||||| ||||||||||||||||||||    
T  14111965 tgtcaaacataagttataatcttgttgagcttgacctttctgtcaacaacttggaggctcctccatcaagtgactatggcatagtgatga 14111876  T

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Target: chr6; HSP #11
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 102 - 206
Target Start/End: Complemental strand, 14086171 - 14086067
Alignment:
Q  102 tgatattcgagtgggtgtcaaacataagttccaatcttgttgagcttgacctttctttaaacttcttggaggctcctccatcaattgactatggcatagt 201  Q
    |||||||| | | |||||||||||||||||||||||||||| |||||||| |||| || |||  |||| ||| ||||||||||  |||||||||||||||    
T  14086171 tgatattccaattggtgtcaaacataagttccaatcttgttaagcttgacatttcatttaaccacttgaaggatcctccatcatatgactatggcatagt 14086072  T
Q  202 gatga 206  Q
     ||||    
T  14086071 tatga 14086067  T

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Target: chr6; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 211
Target Start/End: Complemental strand, 14016584 - 14016475
Alignment:
Q  102 tgatattcgagtgggtgtcaaacataagttccaatcttgttgagcttgacctttctttaaacttcttggaggctcctccatcaattgactatggcatagt 201  Q
    |||||||  |||||||||||||||| |||||||||||| |||||||||||||||||   ||| | ||||||| || |||||||  ||  |||||||||||    
T  14016584 tgatatttcagtgggtgtcaaacatgagttccaatcttattgagcttgacctttctaacaaccttttggaggttcttccatcatatggttatggcatagt 14016485  T
Q  202 gatgatgtcc 211  Q
    ||||| ||||    
T  14016484 gatgaagtcc 14016475  T

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Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 105 - 206
Target Start/End: Original strand, 13873864 - 13873965
Alignment:
Q  105 tattcgagtgggtgtcaaacataagttccaatcttgttgagcttgacctttctttaaacttcttggaggctcctccatcaattgactatggcatagtgat 204  Q
    ||||| ||||| | |||||||||||||||||||||||| |||||||||||||    ||| ||||||||| | ||||||||  |||||||| |||||| ||    
T  13873864 tattccagtggctttcaaacataagttccaatcttgttaagcttgacctttccaacaacctcttggaggattctccatcatatgactatgacatagttat 13873963  T
Q  205 ga 206  Q
    ||    
T  13873964 ga 13873965  T

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Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 117 - 206
Target Start/End: Complemental strand, 13942553 - 13942464
Alignment:
Q  117 tgtcaaacataagttccaatcttgttgagcttgacctttctttaaacttcttggaggctcctccatcaattgactatggcatagtgatga 206  Q
    |||||||||||||||||||||||||||||||||||||||||   |||   ||||||| ||||||||||  ||  ||||||| ||||||||    
T  13942553 tgtcaaacataagttccaatcttgttgagcttgacctttctcagaaccgtttggaggatcctccatcatatggttatggcacagtgatga 13942464  T

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Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 55 - 154
Target Start/End: Complemental strand, 14048918 - 14048819
Alignment:
Q  55 ttctctttctatccttgatctctctgaaaataactttatgtcatctttgatattcgagtgggtgtcaaacataagttccaatcttgttgagcttgacctt 154  Q
    |||||||||||||||||||||||||   || ||||||  |||||| | ||||||| | |||||||||||||| ||| ||||||||||   ||||||||||    
T  14048918 ttctctttctatccttgatctctcttggaacaactttgcgtcatcctcgatattccattgggtgtcaaacattagtcccaatcttgtgatgcttgacctt 14048819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 184
Target Start/End: Original strand, 13471573 - 13471640
Alignment:
Q  117 tgtcaaacataagttccaatcttgttgagcttgacctttctttaaacttcttggaggctcctccatca 184  Q
    ||||||| |||||||||||||||||||||||| ||||| ||  |||| || |||||||||| ||||||    
T  13471573 tgtcaaatataagttccaatcttgttgagcttaaccttgctggaaacctcctggaggctcccccatca 13471640  T

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