View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3778_low_2 (Length: 488)
Name: NF3778_low_2
Description: NF3778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3778_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 19 - 481
Target Start/End: Complemental strand, 38065652 - 38065189
Alignment:
| Q |
19 |
gtctacgcattcggagttgtcttgttagagctcctaacaggaagaaaatcaggagaagtcgtttcgggaattcctggcatggctgaacttaccgattggg |
118 |
Q |
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| T |
38065652 |
gtctacgcattcggagttgtcttgttagagctcctaacaggaagaaaatcaggagaagtcgtttcgggaattcctggcatggctgaacttaccgattggg |
38065553 |
T |
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| Q |
119 |
taagattcttagctgaacacggtcgctcgaaccaatgctttgaaaattcccttgtggataatcacaatggagaagattcatataggattcttgacgacat |
218 |
Q |
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| T |
38065552 |
taagattcttagctgaacacggtcgctcgaaccaatgctttgaaaattcccttgtggataatgacaatggagaagattcatataggattcttgacgacat |
38065453 |
T |
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| Q |
219 |
gcttaaagtggctattagatgcaccctttcagcatccgagagacctgacatgaaaacagtgtttgatgatctttcaacaataaaggagagttgatgatca |
318 |
Q |
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| T |
38065452 |
gcttaaagtggctattagatgcaccctttcagcatccgagagacctgacatgaaaacagtgtttgatgatctttcaacaataaaggagagttgatgatca |
38065353 |
T |
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| Q |
319 |
cagcctcagccactggaatcatcattgtttataattgttttggttacttttgaagtatattatttannnnnnnaccttgatgacaattcttcataggcat |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38065352 |
cagcctcagccactggaatcatcattgtttataattgttttggttacttttgaagtatattatttatttttttaccttgatgacaattcttcataggcat |
38065253 |
T |
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| Q |
419 |
tttaacaagtctccggataataaatgaaattctttatt-aaagaaaattcgttcttttcatctc |
481 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
38065252 |
tttaacaagtctccggataataaatgaaattctttattaaaagaaaattcgttcttttcatctc |
38065189 |
T |
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