View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3778_low_3 (Length: 434)
Name: NF3778_low_3
Description: NF3778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3778_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 42068479 - 42068062
Alignment:
| Q |
1 |
tgacccatatacaaaatgtattaagattttacgttaaaatattatgtttaaatcatttatatggttgcccttgattcaacgtggaacccgagctcc---c |
97 |
Q |
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| T |
42068479 |
tgacccatatacaaaatatcttaagattttacgttaaaatattatgtttaactcatttatatgattgcccttgattcaacgtggaacccgagctcctccc |
42068380 |
T |
|
| Q |
98 |
ttcatgagcaaacaaaaatacaacccacttgaggggtgatagaagatagagag--tagtattgattctgagtatagtttgccaattgaccaatcaacaac |
195 |
Q |
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| T |
42068379 |
ttcatgatcaaacaaaaatacaacccacttgaggggtgatagaagatagagagggtagtattgattctgagtatagtttgccaattgaccaatcaacaac |
42068280 |
T |
|
| Q |
196 |
actatttacttcacgataaacatatgcttcacatagacctctcaaccacgatccaatcaatacttccatgtttgaaacatcctcaactaaggtattagat |
295 |
Q |
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| T |
42068279 |
actatttacttcacgataaacat--gcttcacatagacctctcaaccacgatccaatcaatacttccatgtttgaaacatcctcaactaaggtattagat |
42068182 |
T |
|
| Q |
296 |
ttgcagtgattttgagagaagtaaaaagaaagcccaattttatgcttaaaaaataattttattttgtaccgatgattatgaagaaaaattccatgataaa |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42068181 |
ttgcagtgattttgagagaagtaaaaagaaagcccaattttatgcttaaaaaataattttattttgtaccgatgattatgaagaaaaattccatgataaa |
42068082 |
T |
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| Q |
396 |
ccgcacctctgtggagtatg |
415 |
Q |
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| T |
42068081 |
ccgcacctctgtgcagtatg |
42068062 |
T |
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