View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3778_low_4 (Length: 416)
Name: NF3778_low_4
Description: NF3778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3778_low_4 |
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| [»] scaffold0113 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 30684931 - 30685315
Alignment:
| Q |
1 |
atgtagcttacagcaaagagaacaaatgagttaaaatgaagcatcaatggcttaatcctccttattcctcgactacttcaattgttccaattcttttatc |
100 |
Q |
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| T |
30684931 |
atgtagcttacagcaaagagatcaaatgagttaaaatgaagcatcaatggcttaatcctc----------gactacttcaattgttccaattcttttatc |
30685020 |
T |
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| Q |
101 |
aactgataatatgatgtgatacaagaaaatggtgacgtgcaactctatttatagagtttccaaaagtggtgatgactcaattagagaaatatgggtcaca |
200 |
Q |
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| T |
30685021 |
aactgataatatgatgtgatactagaaaatggtgacgtgcaactctatttatagagtttccaaaagtg---atgactcaattagagaaatatgggtcaca |
30685117 |
T |
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| Q |
201 |
aagtgaataaatttttcttcacaagtgaatgtcagtcgggtaacggggatataaatattcgcccccgaacccatacccaaatatattccgttgtagaaaa |
300 |
Q |
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| T |
30685118 |
a------taaatttttcttcccaagtgaatgtctgtcgggtaacggggatataaatattcgaccccgaatccatacccaaacatgttttattgtagaaaa |
30685211 |
T |
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| Q |
301 |
ttactttatcatccattgctatttgccatgttataaaattttcaattgatatttaaaaaagcagtcaaatcattgagttagagaaatgttaaaataaaca |
400 |
Q |
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| T |
30685212 |
ttactttatcatccattgctatttgcaatgttaaatttttttcaattgatatttaaaaaagcagtcaaatcattgagttagagaaatgttaaaataaaca |
30685311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 292 - 379
Target Start/End: Original strand, 34487134 - 34487220
Alignment:
| Q |
292 |
tgtagaaaattactttatcatccattgctatttgccatgttataaaattttcaattgatatttaaaaaagcagtcaaatcattgagtt |
379 |
Q |
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| T |
34487134 |
tgtagaaaagttctttatcatccattggtattt-ccatgttataaaatttgcaattgatatttaaagaagcagccaagtcattcagtt |
34487220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 314 - 404
Target Start/End: Complemental strand, 10105061 - 10104971
Alignment:
| Q |
314 |
cattgctatttgccatgttataaaattttcaattgatatttaaaaaagcagtcaaatcattgagttagagaaatgttaaaataaacatatt |
404 |
Q |
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| T |
10105061 |
cattgatatttgccatgttataaaatttgcaattcatatttaaaagagcaatcaaatttttcgattaaattaatgttaaaataaacatatt |
10104971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 286 - 397
Target Start/End: Complemental strand, 50684472 - 50684362
Alignment:
| Q |
286 |
ttccgttgtagaaaattactttatcatccattgctatttgccatgttataaaattttcaattgatatttaaaaaagcagtcaaatcattgagttagagaa |
385 |
Q |
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|||| ||||||||| ||||||||| ||| ||| |||||| ||||||||||||||| |||||||||||||||||| || ||||||||| | | | ||| |
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| T |
50684472 |
ttccattgtagaaatttactttattatctatttatatttgtcatgttataaaatttgcaattgatatttaaaaaa-caaccaaatcattcactcaatgaa |
50684374 |
T |
|
| Q |
386 |
atgttaaaataa |
397 |
Q |
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| T |
50684373 |
atgttaaaataa |
50684362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0113 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0113
Description:
Target: scaffold0113; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 297 - 404
Target Start/End: Original strand, 41471 - 41579
Alignment:
| Q |
297 |
aaaattactttatcatccattgctatttgc-catgttataaaattttcaattgatatttaaaaaagcagtcaaatcattgagttagag-aaatgttaaaa |
394 |
Q |
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||||||||||||||||| ||| ||||| ||||||||||||||| ||||||||||||||| ||| |||||||||||| | ||| || ||||||||||| |
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| T |
41471 |
aaaattactttatcatcaatttatattttttcatgttataaaatttgcaattgatatttaaagaagtagtcaaatcattca-ttaaagaaaatgttaaaa |
41569 |
T |
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| Q |
395 |
taaacatatt |
404 |
Q |
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| T |
41570 |
tgaacatatt |
41579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 328 - 395
Target Start/End: Complemental strand, 48327430 - 48327363
Alignment:
| Q |
328 |
atgttataaaattttcaattgatatttaaaaaagcagtcaaatcattgagttagagaaatgttaaaat |
395 |
Q |
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| T |
48327430 |
atgttataaaatttgcaattgatatttaaagaagcaaccaaatcattcaattaaagaagtgttaaaat |
48327363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 292 - 357
Target Start/End: Complemental strand, 35337772 - 35337707
Alignment:
| Q |
292 |
tgtagaaaattactttatcatccattgctatttgccatgttataaaattttcaattgatatttaaa |
357 |
Q |
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|||||||||||| ||||| | |||| |||||| ||||||||||||||| ||||||||||||||| |
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| T |
35337772 |
tgtagaaaattattttattactcattaatatttgtcatgttataaaatttgcaattgatatttaaa |
35337707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 357
Target Start/End: Complemental strand, 35167236 - 35167170
Alignment:
| Q |
292 |
tgtagaaaattactttatcatccattgctattt-gccatgttataaaattttcaattgatatttaaa |
357 |
Q |
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|||||| ||||||||||||| | |||| ||||| ||||||||||||||||| | || |||||||||| |
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| T |
35167236 |
tgtagacaattactttatcaccgattgatattttgccatgttataaaatttgctatggatatttaaa |
35167170 |
T |
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