View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3779_high_12 (Length: 227)
Name: NF3779_high_12
Description: NF3779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3779_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 14 - 210
Target Start/End: Original strand, 8908874 - 8909070
Alignment:
| Q |
14 |
cagagaacgcagtagtgattttcagcataagcacttgttgcatgtgtcatgctatcaagagattgttctgtggaatgggagtgaatccagctgttcatga |
113 |
Q |
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| T |
8908874 |
cagaaaacgcagtagtgattttcagcataagcacttgttgcatgtgtcatgctatcaagagattgttctgtggaatgggagtgaatccagctgttcatga |
8908973 |
T |
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| Q |
114 |
acttgatgaagatccaagaggcaaagaacttgaaagagcacttatgagacttcttggtacttcaaatgttgttcctgttgttttcattggtggtaaa |
210 |
Q |
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| T |
8908974 |
acttgatgaagatccaagaggcaaagaacttgaaagagcacttatgagacttcttggtacttcaaatgttgttcctgttgttttcattggtggtaaa |
8909070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 28 - 141
Target Start/End: Original strand, 7300096 - 7300209
Alignment:
| Q |
28 |
gtgattttcagcataagcacttgttgcatgtgtcatgctatcaagagattgttctgtggaatgggagtgaatccagctgttcatgaacttgatgaagatc |
127 |
Q |
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| T |
7300096 |
gtgatattcagcataagtagttgctgtatgtgtcatgcaatgaagagtttgttctgtggaatgggagtgaatgcaatggttcatgaagttgatgaagatc |
7300195 |
T |
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| Q |
128 |
caagaggcaaagaa |
141 |
Q |
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| T |
7300196 |
ctaaagggaaagaa |
7300209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 28 - 128
Target Start/End: Complemental strand, 7333579 - 7333479
Alignment:
| Q |
28 |
gtgattttcagcataagcacttgttgcatgtgtcatgctatcaagagattgttctgtggaatgggagtgaatccagctgttcatgaacttgatgaagatc |
127 |
Q |
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| T |
7333579 |
gtgatattcagcataagtagttgttgtatgtgccatgcaatgaagagtttgttctgtggaatgggagtgaatgcaatggttcatgaagttgatgaagatc |
7333480 |
T |
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| Q |
128 |
c |
128 |
Q |
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| T |
7333479 |
c |
7333479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 141
Target Start/End: Complemental strand, 7340368 - 7340255
Alignment:
| Q |
28 |
gtgattttcagcataagcacttgttgcatgtgtcatgctatcaagagattgttctgtggaatgggagtgaatccagctgttcatgaacttgatgaagatc |
127 |
Q |
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| T |
7340368 |
gtgatattcagcataagtagttgctgtatgtgtcatgcaatgaagagtttgttctgtggtatgggagtgaatgcaatggttcatgaagttgatgaagatc |
7340269 |
T |
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| Q |
128 |
caagaggcaaagaa |
141 |
Q |
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| T |
7340268 |
ctaaagggaaagaa |
7340255 |
T |
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