View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3779_high_2 (Length: 469)

Name: NF3779_high_2
Description: NF3779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3779_high_2
NF3779_high_2
[»] chr4 (1 HSPs)
chr4 (126-451)||(44303074-44303419)
[»] chr3 (4 HSPs)
chr3 (67-451)||(32979413-32979807)
chr3 (183-264)||(11219892-11219977)
chr3 (387-451)||(42633331-42633396)
chr3 (215-253)||(42633168-42633206)
[»] chr8 (3 HSPs)
chr8 (345-451)||(38590421-38590525)
chr8 (185-264)||(45541969-45542054)
chr8 (215-253)||(38590612-38590650)
[»] chr2 (6 HSPs)
chr2 (183-264)||(6707719-6707806)
chr2 (185-264)||(12853359-12853444)
chr2 (215-264)||(23178174-23178223)
chr2 (215-264)||(23589431-23589480)
chr2 (264-295)||(23178240-23178271)
chr2 (264-295)||(23589497-23589528)
[»] chr1 (4 HSPs)
chr1 (345-451)||(25786577-25786681)
chr1 (183-264)||(26055691-26055778)
chr1 (215-253)||(25786767-25786805)
chr1 (215-254)||(1616503-1616542)
[»] scaffold1974 (2 HSPs)
scaffold1974 (183-264)||(196-282)
scaffold1974 (264-295)||(147-178)
[»] scaffold1878 (2 HSPs)
scaffold1878 (183-264)||(992-1078)
scaffold1878 (264-295)||(1096-1127)
[»] scaffold0290 (2 HSPs)
scaffold0290 (183-264)||(9108-9194)
scaffold0290 (264-295)||(9059-9090)
[»] scaffold0007 (2 HSPs)
scaffold0007 (345-451)||(145299-145403)
scaffold0007 (215-253)||(145491-145529)
[»] chr6 (1 HSPs)
chr6 (185-264)||(34083791-34083876)
[»] scaffold0051 (1 HSPs)
scaffold0051 (185-259)||(39468-39548)
[»] chr5 (2 HSPs)
chr5 (223-264)||(18694113-18694154)
chr5 (330-370)||(21388184-21388224)


Alignment Details
Target: chr4 (Bit Score: 150; Significance: 4e-79; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 126 - 451
Target Start/End: Original strand, 44303074 - 44303419
Alignment:
Q  126 aattaaaacacataaaccttcaaata-aattaaacccatannnnnnnnctnnnnnnnnccagaaatcatcatcattagcagcaacaacacaaatcaaatt 224  Q
    |||||||||||||||||||||||||| |||||||||||||        ||        ||||||||||||||||||||||||||||||||||||||||||    
T  44303074 aattaaaacacataaaccttcaaatagaattaaacccatattttttttctaaaaaaaaccagaaatcatcatcattagcagcaacaacacaaatcaaatt 44303173  T
Q  225 caacccattttaattcttttcatcatcatcttcatgaat-----------------tccaaattcagcacatcaacaaca---caacaacacgatgcttt 304  Q
    |||||||||||||||||||||||||||||||||||||||                 |||||||||| |||||||||||||   |||||||||||||||||    
T  44303174 caacccattttaattcttttcatcatcatcttcatgaattaaaaacaatggatttctccaaattcatcacatcaacaacatagcaacaacacgatgcttt 44303273  T
Q  305 gaaccaacaacatcatnnnnnnnnttctctctcttccctttctctcttccaatccattcatagaaacataacnnnnnnnnnnttgaattcttgctttttt 404  Q
    ||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||    
T  44303274 gaaccaacaacatcataaaaaaatatctctctcttccctttctctcttccaatccattcatagaaacataac-aaaaaaaaattgaattcttgctttttt 44303372  T
Q  405 ctcttccctttccctcaaatgtgtggtactgtaatcacacataatca 451  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||    
T  44303373 ctcttccctttctctcaaatgtgtggtactgtaatcacacataatca 44303419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 145; Significance: 4e-76; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 67 - 451
Target Start/End: Original strand, 32979413 - 32979807
Alignment:
Q  67 acaatcctacccagaaagaagnnnnnnntcaatagcacaaattaaaacacataaaccagaattaaaacacataaaccttcaaata-aattaaacccatan 165  Q
    |||||||||||||||||||||       |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||     
T  32979413 acaatcctacccagaaagaagaaaaaa-tcaatagcacaaattaaaacacataaactagaattaaaacacataaaccttcaaatagaattaaacccatat 32979511  T
Q  166 nnnnnnn--ctnnnnnnnnccagaaatcatcatcattagcagcaacaacacaaatcaaattcaacccattttaattcttttcatcatcatcttcatgaat 263  Q
             ||        |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32979512 tttttttttcttaaaaaaaccagaaatcatcatcattagcatcaacaacacaaatcaaattcaacccattttaattcttttcatcatcatcttcatgaat 32979611  T
Q  264 tccaaa--------ttcagcaca-tcaacaacacaacaacacgatgctttgaaccaacaacatcatnnnnnnnnttctctctcttccctttctctcttcc 354  Q
    |  |||        |||  || | ||| ||   |||||||||||| ||||||||||||||||||||         |||||||||||||||||||||||||    
T  32979612 taaaaacaatggatttctccaaattcagcacatcaacaacacgatactttgaaccaacaacatcataaaaaaatatctctctcttccctttctctcttcc 32979711  T
Q  355 aatccattcatagaaacataacnnnnnnnnnnttgaattcttgc-ttttttctcttccctttccctcaaatgtgtggtactgtaatcacacataatca 451  Q
    ||||||||||||||||||||||          |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  32979712 aatccattcatagaaacataac--aaaaaaaattgaattcttgctttttttctcttccctttctctcaaatgtgtggtactgtaatcacacataatca 32979807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 183 - 264
Target Start/End: Original strand, 11219892 - 11219977
Alignment:
Q  183 ccagaaatcatcatcattagcagcaacaacac----aaatcaaattcaacccattttaattcttttcatcatcatcttcatgaatt 264  Q
    |||||||||||||||  ||||||||||||||     |||||||||||||||  |||| |||||||||||||||||| |||||||||    
T  11219892 ccagaaatcatcatctatagcagcaacaacatcaagaaatcaaattcaaccatttttgattcttttcatcatcatcatcatgaatt 11219977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 387 - 451
Target Start/End: Original strand, 42633331 - 42633396
Alignment:
Q  387 ttgaattcttgcttttt-tctcttccctttccctcaaatgtgtggtactgtaatcacacataatca 451  Q
    ||||||| ||||||||| ||||||| ||||| |||||||||| |||||| ||||||||||||||||    
T  42633331 ttgaattgttgctttttctctcttctctttctctcaaatgtgcggtactataatcacacataatca 42633396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 253
Target Start/End: Original strand, 42633168 - 42633206
Alignment:
Q  215 aaatcaaattcaacccattttaattcttttcatcatcat 253  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  42633168 aaatcatattcaacccattttaattcttttcatcatcat 42633206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 8e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 345 - 451
Target Start/End: Complemental strand, 38590525 - 38590421
Alignment:
Q  345 tctctcttccaatccattcatagaaacataacnnnnnnnnnnttgaattcttgcttttt-tctcttccctttccctcaaatgtgtggtactgtaatcaca 443  Q
    |||||||||||||||||||||| |||||||||          ||||||| ||||||||| ||||||||||||| |||||||||| |||||||||||||||    
T  38590525 tctctcttccaatccattcataaaaacataacaaaaaaa---ttgaattgttgctttttctctcttccctttctctcaaatgtgcggtactgtaatcaca 38590429  T
Q  444 cataatca 451  Q
    ||||||||    
T  38590428 cataatca 38590421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 185 - 264
Target Start/End: Original strand, 45541969 - 45542054
Alignment:
Q  185 agaaatcatcatcattagcagcaacaacaca------aatcaaattcaacccattttaattcttttcatcatcatcttcatgaatt 264  Q
    |||||||||||||| ||||||||||||||||      ||||||| ||||||  |||| |||||||||||||||||| |||||||||    
T  45541969 agaaatcatcatcaatagcagcaacaacacatcaagaaatcaaaatcaaccattttttattcttttcatcatcatcatcatgaatt 45542054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 253
Target Start/End: Complemental strand, 38590650 - 38590612
Alignment:
Q  215 aaatcaaattcaacccattttaattcttttcatcatcat 253  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  38590650 aaatcatattcaacccattttaattcttttcatcatcat 38590612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 8e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 183 - 264
Target Start/End: Complemental strand, 6707806 - 6707719
Alignment:
Q  183 ccagaaatcatcatcattagcagcaacaacaca------aatcaaattcaacccattttaattcttttcatcatcatcttcatgaatt 264  Q
    |||||||||||||||| ||||||||||||||||      ||||||||||||||| |||| |||||||||||||||||| |||||||||    
T  6707806 ccagaaatcatcatcaatagcagcaacaacacatcaaaaaatcaaattcaacccttttttattcttttcatcatcatcatcatgaatt 6707719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 185 - 264
Target Start/End: Original strand, 12853359 - 12853444
Alignment:
Q  185 agaaatcatcatcattagcagcaacaacaca------aatcaaattcaacccattttaattcttttcatcatcatcttcatgaatt 264  Q
    |||||||||||||| || |||||||||||||      ||||||||||||||  ||||||||||||||||||||||| |||||||||    
T  12853359 agaaatcatcatcaatatcagcaacaacacatcaagaaatcaaattcaaccttttttaattcttttcatcatcatcatcatgaatt 12853444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 215 - 264
Target Start/End: Original strand, 23178174 - 23178223
Alignment:
Q  215 aaatcaaattcaacccattttaattcttttcatcatcatcttcatgaatt 264  Q
    |||||||||||||||| |||| |||||||||||||||||| |||||||||    
T  23178174 aaatcaaattcaaccctttttgattcttttcatcatcatcatcatgaatt 23178223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 215 - 264
Target Start/End: Original strand, 23589431 - 23589480
Alignment:
Q  215 aaatcaaattcaacccattttaattcttttcatcatcatcttcatgaatt 264  Q
    |||||||||||||||| |||| |||||||||||||||||| |||||||||    
T  23589431 aaatcaaattcaaccctttttgattcttttcatcatcatcatcatgaatt 23589480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 295
Target Start/End: Original strand, 23178240 - 23178271
Alignment:
Q  264 tccaaattcagcacatcaacaacacaacaaca 295  Q
    ||||||||||||||||||||||||||||||||    
T  23178240 tccaaattcagcacatcaacaacacaacaaca 23178271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 295
Target Start/End: Original strand, 23589497 - 23589528
Alignment:
Q  264 tccaaattcagcacatcaacaacacaacaaca 295  Q
    ||||||||||||||||||||||||||||||||    
T  23589497 tccaaattcagcacatcaacaacacaacaaca 23589528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 8e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 345 - 451
Target Start/End: Complemental strand, 25786681 - 25786577
Alignment:
Q  345 tctctcttccaatccattcatagaaacataacnnnnnnnnnnttgaattcttgcttttt-tctcttccctttccctcaaatgtgtggtactgtaatcaca 443  Q
    |||||||||||||||||||||| |||||||||          ||||||| ||||||||| ||||||||||||| |||||||||| |||||||||||||||    
T  25786681 tctctcttccaatccattcataaaaacataacaaaaaaa---ttgaattgttgctttttctctcttccctttctctcaaatgtgcggtactgtaatcaca 25786585  T
Q  444 cataatca 451  Q
    ||||||||    
T  25786584 cataatca 25786577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 183 - 264
Target Start/End: Complemental strand, 26055778 - 26055691
Alignment:
Q  183 ccagaaatcatcatcattagcagcaacaacaca------aatcaaattcaacccattttaattcttttcatcatcatcttcatgaatt 264  Q
    |||||||||||||||| ||||||||||||||||      ||||||||||||||| |||| |||||||||||||||||| |||||||||    
T  26055778 ccagaaatcatcatcaatagcagcaacaacacatcaagaaatcaaattcaaccctttttgattcttttcatcatcatcatcatgaatt 26055691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 253
Target Start/End: Complemental strand, 25786805 - 25786767
Alignment:
Q  215 aaatcaaattcaacccattttaattcttttcatcatcat 253  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  25786805 aaatcatattcaacccattttaattcttttcatcatcat 25786767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 254
Target Start/End: Original strand, 1616503 - 1616542
Alignment:
Q  215 aaatcaaattcaacccattttaattcttttcatcatcatc 254  Q
    |||||||||||||||| ||| |||||||||||||||||||    
T  1616503 aaatcaaattcaacccttttgaattcttttcatcatcatc 1616542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1974 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold1974
Description:

Target: scaffold1974; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 183 - 264
Target Start/End: Complemental strand, 282 - 196
Alignment:
Q  183 ccagaaatcatcatcattagcagcaacaacaca------aatcaaattcaacccattttaattcttttcatcatcatcttcatgaatt 264  Q
    |||||||||||||||| ||| ||||||||||||      ||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  282 ccagaaatcatcatcaatag-agcaacaacacatcaagaaatcaaattcaaccctttttaattcttttcatcatcatcatcatgaatt 196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1974; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 295
Target Start/End: Complemental strand, 178 - 147
Alignment:
Q  264 tccaaattcagcacatcaacaacacaacaaca 295  Q
    ||||||||||||||||||||||||||||||||    
T  178 tccaaattcagcacatcaacaacacaacaaca 147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1878 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold1878
Description:

Target: scaffold1878; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 183 - 264
Target Start/End: Original strand, 992 - 1078
Alignment:
Q  183 ccagaaatcatcatcattagcagcaacaacaca------aatcaaattcaacccattttaattcttttcatcatcatcttcatgaatt 264  Q
    |||||||||||||||| ||| ||||||||||||      ||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  992 ccagaaatcatcatcaatag-agcaacaacacatcaagaaatcaaattcaaccctttttaattcttttcatcatcatcatcatgaatt 1078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1878; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 295
Target Start/End: Original strand, 1096 - 1127
Alignment:
Q  264 tccaaattcagcacatcaacaacacaacaaca 295  Q
    ||||||||||||||||||||||||||||||||    
T  1096 tccaaattcagcacatcaacaacacaacaaca 1127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 183 - 264
Target Start/End: Complemental strand, 9194 - 9108
Alignment:
Q  183 ccagaaatcatcatcattagcagcaacaacaca------aatcaaattcaacccattttaattcttttcatcatcatcttcatgaatt 264  Q
    |||||||||||||||| ||| ||||||||||||      ||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  9194 ccagaaatcatcatcaatag-agcaacaacacatcaagaaatcaaattcaaccctttttaattcttttcatcatcatcatcatgaatt 9108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 295
Target Start/End: Complemental strand, 9090 - 9059
Alignment:
Q  264 tccaaattcagcacatcaacaacacaacaaca 295  Q
    ||||||||||||||||||||||||||||||||    
T  9090 tccaaattcagcacatcaacaacacaacaaca 9059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 345 - 451
Target Start/End: Complemental strand, 145403 - 145299
Alignment:
Q  345 tctctcttccaatccattcatagaaacataacnnnnnnnnnnttgaattcttgcttttt-tctcttccctttccctcaaatgtgtggtactgtaatcaca 443  Q
    ||||||||||||||||||||||||||||||||          ||||||| ||||||||| ||||||||||||| |||||||||| |||||| |||||||     
T  145403 tctctcttccaatccattcatagaaacataacaaaaaaa---ttgaattgttgctttttctctcttccctttctctcaaatgtgcggtactataatcacg 145307  T
Q  444 cataatca 451  Q
    ||||||||    
T  145306 cataatca 145299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 253
Target Start/End: Complemental strand, 145529 - 145491
Alignment:
Q  215 aaatcaaattcaacccattttaattcttttcatcatcat 253  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  145529 aaatcatattcaacccattttaattcttttcatcatcat 145491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 185 - 264
Target Start/End: Complemental strand, 34083876 - 34083791
Alignment:
Q  185 agaaatcatcatcattagcagcaacaacaca------aatcaaattcaacccattttaattcttttcatcatcatcttcatgaatt 264  Q
    |||||| ||||||| ||||||||||||||||      ||||||||||||||| |||| |||||||||||||||||| |||||||||    
T  34083876 agaaattatcatcaatagcagcaacaacacatcaagaaatcaaattcaacccttttttattcttttcatcatcatcatcatgaatt 34083791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 185 - 259
Target Start/End: Complemental strand, 39548 - 39468
Alignment:
Q  185 agaaatcatcatcattagcagcaacaacaca------aatcaaattcaacccattttaattcttttcatcatcatcttcat 259  Q
    |||||||||||||| ||||||||||||||||      ||||||| ||||||| |||| |||||||||||||||||| ||||    
T  39548 agaaatcatcatcaatagcagcaacaacacatcaagaaatcaaagtcaacccttttttattcttttcatcatcatcatcat 39468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 264
Target Start/End: Original strand, 18694113 - 18694154
Alignment:
Q  223 ttcaacccattttaattcttttcatcatcatcttcatgaatt 264  Q
    |||| ||| ||||||||||||||||||||||| |||||||||    
T  18694113 ttcatccctttttaattcttttcatcatcatcatcatgaatt 18694154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 330 - 370
Target Start/End: Original strand, 21388184 - 21388224
Alignment:
Q  330 tctctctcttccctttctctcttccaatccattcatagaaa 370  Q
    ||||||||||||||||||||  ||||| |||||||||||||    
T  21388184 tctctctcttccctttctcttatccaaaccattcatagaaa 21388224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University