View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3779_low_1 (Length: 611)
Name: NF3779_low_1
Description: NF3779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3779_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 470; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Complemental strand, 880443 - 879950
Alignment:
| Q |
1 |
gtctcgtcctttttataatgcattcgagataatttcatcgttgtcacatggttttgatcttaggagtttatttgagacgaggaagaggttgccatcgatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
880443 |
gtctcgtcctttttataatgcattcgagataatttcatcgttgtcacatggttttgatcttaggagtttatttgagacgaggaagaggttgccatcgatg |
880344 |
T |
|
| Q |
101 |
tttatatcaaagttttcggcttcaacaatgttggagaaacttgaggtgatggcgaagaagttaaatttgaagataacagggaagaaggagtttgtcgtga |
200 |
Q |
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| T |
880343 |
tttatatcaaagttttcggcttcaacaatgttggagaaacttgaggtgatggggaagaagttaaatttgaagataacagggaagaaggagtttgtcgtga |
880244 |
T |
|
| Q |
201 |
gaatggagggcgcaagggaggggagaaagggaaaggtcgcgatgacaatggaggtatttgaggtggcgccggaggtggcagtggttgagttttctaagtg |
300 |
Q |
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| T |
880243 |
gaatggagggcgcaagggaggggagaaagggaaaggtagcgatgacaatggaggtatttgaggtggcgccggaggtggcagtggttgagttttctaagtg |
880144 |
T |
|
| Q |
301 |
tggtggagacacattggagtatgttaagatgtgtgaggaacaattgagaccttcactcaaagatattgtttggagttggcaaggtgacaatcataatgat |
400 |
Q |
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| T |
880143 |
tggtggagacacattggagtatgttaagatgtgtgaggaacaattgagaccttcactcaaagatattgtttggagttggcaaggtgacaatcataatgat |
880044 |
T |
|
| Q |
401 |
aataatcttcaatagtaacaattagtatagtttgaaagttgtttgtctatgtagtcgacaattcgataaatgtctgatcttaatcgaataattc |
494 |
Q |
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| T |
880043 |
aataatcctcaatagtaacaattagtatagtttgaaagttggttgtctatgtagtcgacaattcgataatcgtctgatcttaatcgaataattc |
879950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 497 - 603
Target Start/End: Complemental strand, 879973 - 879866
Alignment:
| Q |
497 |
cgtctgatcttaattgaataattcaaatttctaataannnnnnn-atatttgatgtatccaacttaaagtatgagctatcctatcattagtagttggtac |
595 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
879973 |
cgtctgatcttaatcgaataattcaaatttctaataattttttttatatttgatgtatccaagtacaagtatgagctatcctatcattagtagttggtac |
879874 |
T |
|
| Q |
596 |
cctttgct |
603 |
Q |
| |
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|||||||| |
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| T |
879873 |
cctttgct |
879866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 9e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 17 - 387
Target Start/End: Complemental strand, 45267918 - 45267548
Alignment:
| Q |
17 |
aatgcattcgagataatttcatcgttgtcacatggttttgatcttaggagtttatttgagacgaggaagaggttgccatcgatgtttatatcaaagtttt |
116 |
Q |
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|||||||| |||||||||||||| || |||||||| |||||||| |||| ||| ||||||||||||||||| | ||| |||||||||||||| ||||| | |
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| T |
45267918 |
aatgcatttgagataatttcatctttatcacatggatttgatctaaggaatttgtttgagacgaggaagagatcgccttcgatgtttatatccaagttgt |
45267819 |
T |
|
| Q |
117 |
cggcttcaacaatgttggagaaacttgaggtgatggcgaagaagttaaatttgaagataacagggaagaaggagtttgtcgtgagaatggagggcgcaag |
216 |
Q |
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| ||||| | || ||| ||| || ||| ||||||||||| | ||||||| | |||| ||||||||||| || | ||||||||| |||| ||| |
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| T |
45267818 |
ctgcttctgcggtggtggggaagctggagaatgtggcgaagaagcttaatttgagggtaacggggaagaaggatttcatggtgagaatgcaggggacaac |
45267719 |
T |
|
| Q |
217 |
ggaggggagaaagggaaaggtcgcgatgacaatggaggtatttgaggtggcgccggaggtggcagtggttgagttttctaagtgtggtggagacacattg |
316 |
Q |
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|||||||| ||||| || | | ||||| ||||||| |||||||| || ||||||||||||||||| ||||||||||||| | |||||||||| | |
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| T |
45267718 |
agaggggaggaaggggaaattgggtatgacggtggaggtgtttgaggtcgcaccggaggtggcagtggtagagttttctaagtcagctggagacacactt |
45267619 |
T |
|
| Q |
317 |
gagtatgttaagatgtgtgaggaacaattgagaccttcactcaaagatattgtttggagttggcaaggtga |
387 |
Q |
| |
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|||||||| ||| | ||||| || || | |||||||| |||||||| ||||| ||||| ||||| ||||| |
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| T |
45267618 |
gagtatgtaaagttctgtgaagatgaagttagaccttctctcaaagacattgtgtggagctggcagggtga |
45267548 |
T |
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