View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3779_low_11 (Length: 250)
Name: NF3779_low_11
Description: NF3779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3779_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 2 - 243
Target Start/End: Complemental strand, 31503534 - 31503294
Alignment:
| Q |
2 |
ggatgtcgaagaatatataaatgagaggatatgttcagtatatctaatgtttaagattttaagttaagatgtggtgtctaactcacttacgtgattgttc |
101 |
Q |
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| T |
31503534 |
ggatgttgaacactatataaatgagag-atatgttttgtatatctaatgtttaagattttaagttaagatgtggtgtctaactcacttatatgattgttc |
31503436 |
T |
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| Q |
102 |
aaaacctaatgtgaatgatccaacagactccttcatgactcgatataacgtgcatttgaatgatttatgagtataggttaaaattgttgtgtggaaattg |
201 |
Q |
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| T |
31503435 |
aagacctaatgtaaatgatccaacggactccttcatgacctaatataacgtgcatttgaatgatttatgagtataggttaaaattgttgtgtggaaattg |
31503336 |
T |
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| Q |
202 |
ttgtgcatttcatcgtgagtacttttttgatctcaattataa |
243 |
Q |
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| T |
31503335 |
ttgtgtatttcatcgtgagtactcctttgatctcaattataa |
31503294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 115
Target Start/End: Complemental strand, 4481650 - 4481591
Alignment:
| Q |
56 |
gattttaagttaagatgtggtgtctaactcacttacgtgattgttcaaaacctaatgtga |
115 |
Q |
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| T |
4481650 |
gattttaggttaagatgtgatgtttaattcacttatgtgatttttcaaaaactaatgtga |
4481591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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