View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3779_low_15 (Length: 222)
Name: NF3779_low_15
Description: NF3779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3779_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 49870788 - 49870989
Alignment:
| Q |
17 |
ataattaaggtcatgtgcaaccaaatacataaatcacaaacaatcaatgaaggttataatctttgagaaacctcaaaatccagataaaaaccttcattaa |
116 |
Q |
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| T |
49870788 |
ataattaaggtcatgtgcaaccaaatacataaatcacaaacaatttgtgaaggttataatctttgagaaacctcaaaatccagataaaaaccttcattaa |
49870887 |
T |
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| Q |
117 |
ttagttcttttttcacaagggttcattaattagttattcacagcaatgttcactccattttctaccatggacatgaatactgatgatccagtattatcta |
216 |
Q |
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| T |
49870888 |
ttagttcttttttcataagggttcattaattagttattcgaagcaatgttcactccattttctaccatggatatgaatactgatgatccagtgttgtcta |
49870987 |
T |
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| Q |
217 |
cc |
218 |
Q |
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|| |
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| T |
49870988 |
cc |
49870989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 79 - 151
Target Start/End: Complemental strand, 44204915 - 44204842
Alignment:
| Q |
79 |
ttgagaaacctcaaaatccagat-aaaaaccttcattaattagttcttttttcacaagggttcattaattagtt |
151 |
Q |
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|||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
44204915 |
ttgagaaacctcaaaatccatattaaaaaccttcattaattagttcttttttattaagggttcattaattagtt |
44204842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 44205006 - 44204974
Alignment:
| Q |
29 |
atgtgcaaccaaatacataaatcacaaacaatc |
61 |
Q |
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| T |
44205006 |
atgtgcaaccaaatacataaatcacaaacaatc |
44204974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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