View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3779_low_2 (Length: 469)
Name: NF3779_low_2
Description: NF3779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3779_low_2 |
 |  |
|
| [»] scaffold1974 (2 HSPs) |
 |  |  |
|
| [»] scaffold1878 (2 HSPs) |
 |  |  |
|
| [»] scaffold0290 (2 HSPs) |
 |  |  |
|
| [»] scaffold0007 (2 HSPs) |
 |  |  |
|
| [»] scaffold0051 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr4 (Bit Score: 150; Significance: 4e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 126 - 451
Target Start/End: Original strand, 44303074 - 44303419
Alignment:
| Q |
126 |
aattaaaacacataaaccttcaaata-aattaaacccatannnnnnnnctnnnnnnnnccagaaatcatcatcattagcagcaacaacacaaatcaaatt |
224 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44303074 |
aattaaaacacataaaccttcaaatagaattaaacccatattttttttctaaaaaaaaccagaaatcatcatcattagcagcaacaacacaaatcaaatt |
44303173 |
T |
 |
| Q |
225 |
caacccattttaattcttttcatcatcatcttcatgaat-----------------tccaaattcagcacatcaacaaca---caacaacacgatgcttt |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
44303174 |
caacccattttaattcttttcatcatcatcttcatgaattaaaaacaatggatttctccaaattcatcacatcaacaacatagcaacaacacgatgcttt |
44303273 |
T |
 |
| Q |
305 |
gaaccaacaacatcatnnnnnnnnttctctctcttccctttctctcttccaatccattcatagaaacataacnnnnnnnnnnttgaattcttgctttttt |
404 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
44303274 |
gaaccaacaacatcataaaaaaatatctctctcttccctttctctcttccaatccattcatagaaacataac-aaaaaaaaattgaattcttgctttttt |
44303372 |
T |
 |
| Q |
405 |
ctcttccctttccctcaaatgtgtggtactgtaatcacacataatca |
451 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
44303373 |
ctcttccctttctctcaaatgtgtggtactgtaatcacacataatca |
44303419 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 145; Significance: 4e-76; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 67 - 451
Target Start/End: Original strand, 32979413 - 32979807
Alignment:
| Q |
67 |
acaatcctacccagaaagaagnnnnnnntcaatagcacaaattaaaacacataaaccagaattaaaacacataaaccttcaaata-aattaaacccatan |
165 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
32979413 |
acaatcctacccagaaagaagaaaaaa-tcaatagcacaaattaaaacacataaactagaattaaaacacataaaccttcaaatagaattaaacccatat |
32979511 |
T |
 |
| Q |
166 |
nnnnnnn--ctnnnnnnnnccagaaatcatcatcattagcagcaacaacacaaatcaaattcaacccattttaattcttttcatcatcatcttcatgaat |
263 |
Q |
| |
|
|| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32979512 |
tttttttttcttaaaaaaaccagaaatcatcatcattagcatcaacaacacaaatcaaattcaacccattttaattcttttcatcatcatcttcatgaat |
32979611 |
T |
 |
| Q |
264 |
tccaaa--------ttcagcaca-tcaacaacacaacaacacgatgctttgaaccaacaacatcatnnnnnnnnttctctctcttccctttctctcttcc |
354 |
Q |
| |
|
| ||| ||| || | ||| || |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
32979612 |
taaaaacaatggatttctccaaattcagcacatcaacaacacgatactttgaaccaacaacatcataaaaaaatatctctctcttccctttctctcttcc |
32979711 |
T |
 |
| Q |
355 |
aatccattcatagaaacataacnnnnnnnnnnttgaattcttgc-ttttttctcttccctttccctcaaatgtgtggtactgtaatcacacataatca |
451 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
32979712 |
aatccattcatagaaacataac--aaaaaaaattgaattcttgctttttttctcttccctttctctcaaatgtgtggtactgtaatcacacataatca |
32979807 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 183 - 264
Target Start/End: Original strand, 11219892 - 11219977
Alignment:
| Q |
183 |
ccagaaatcatcatcattagcagcaacaacac----aaatcaaattcaacccattttaattcttttcatcatcatcttcatgaatt |
264 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||||||| |||| |||||||||||||||||| ||||||||| |
|
|
| T |
11219892 |
ccagaaatcatcatctatagcagcaacaacatcaagaaatcaaattcaaccatttttgattcttttcatcatcatcatcatgaatt |
11219977 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 387 - 451
Target Start/End: Original strand, 42633331 - 42633396
Alignment:
| Q |
387 |
ttgaattcttgcttttt-tctcttccctttccctcaaatgtgtggtactgtaatcacacataatca |
451 |
Q |
| |
|
||||||| ||||||||| ||||||| ||||| |||||||||| |||||| |||||||||||||||| |
|
|
| T |
42633331 |
ttgaattgttgctttttctctcttctctttctctcaaatgtgcggtactataatcacacataatca |
42633396 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 253
Target Start/End: Original strand, 42633168 - 42633206
Alignment:
| Q |
215 |
aaatcaaattcaacccattttaattcttttcatcatcat |
253 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
42633168 |
aaatcatattcaacccattttaattcttttcatcatcat |
42633206 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 8e-19; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 345 - 451
Target Start/End: Complemental strand, 38590525 - 38590421
Alignment:
| Q |
345 |
tctctcttccaatccattcatagaaacataacnnnnnnnnnnttgaattcttgcttttt-tctcttccctttccctcaaatgtgtggtactgtaatcaca |
443 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||| ||||||||| ||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
38590525 |
tctctcttccaatccattcataaaaacataacaaaaaaa---ttgaattgttgctttttctctcttccctttctctcaaatgtgcggtactgtaatcaca |
38590429 |
T |
 |
| Q |
444 |
cataatca |
451 |
Q |
| |
|
|||||||| |
|
|
| T |
38590428 |
cataatca |
38590421 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 185 - 264
Target Start/End: Original strand, 45541969 - 45542054
Alignment:
| Q |
185 |
agaaatcatcatcattagcagcaacaacaca------aatcaaattcaacccattttaattcttttcatcatcatcttcatgaatt |
264 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||| |||||| |||| |||||||||||||||||| ||||||||| |
|
|
| T |
45541969 |
agaaatcatcatcaatagcagcaacaacacatcaagaaatcaaaatcaaccattttttattcttttcatcatcatcatcatgaatt |
45542054 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 253
Target Start/End: Complemental strand, 38590650 - 38590612
Alignment:
| Q |
215 |
aaatcaaattcaacccattttaattcttttcatcatcat |
253 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38590650 |
aaatcatattcaacccattttaattcttttcatcatcat |
38590612 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 8e-19; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 183 - 264
Target Start/End: Complemental strand, 6707806 - 6707719
Alignment:
| Q |
183 |
ccagaaatcatcatcattagcagcaacaacaca------aatcaaattcaacccattttaattcttttcatcatcatcttcatgaatt |
264 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||||||||||| |||| |||||||||||||||||| ||||||||| |
|
|
| T |
6707806 |
ccagaaatcatcatcaatagcagcaacaacacatcaaaaaatcaaattcaacccttttttattcttttcatcatcatcatcatgaatt |
6707719 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 185 - 264
Target Start/End: Original strand, 12853359 - 12853444
Alignment:
| Q |
185 |
agaaatcatcatcattagcagcaacaacaca------aatcaaattcaacccattttaattcttttcatcatcatcttcatgaatt |
264 |
Q |
| |
|
|||||||||||||| || ||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
12853359 |
agaaatcatcatcaatatcagcaacaacacatcaagaaatcaaattcaaccttttttaattcttttcatcatcatcatcatgaatt |
12853444 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 215 - 264
Target Start/End: Original strand, 23178174 - 23178223
Alignment:
| Q |
215 |
aaatcaaattcaacccattttaattcttttcatcatcatcttcatgaatt |
264 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||| ||||||||| |
|
|
| T |
23178174 |
aaatcaaattcaaccctttttgattcttttcatcatcatcatcatgaatt |
23178223 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 215 - 264
Target Start/End: Original strand, 23589431 - 23589480
Alignment:
| Q |
215 |
aaatcaaattcaacccattttaattcttttcatcatcatcttcatgaatt |
264 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||| ||||||||| |
|
|
| T |
23589431 |
aaatcaaattcaaccctttttgattcttttcatcatcatcatcatgaatt |
23589480 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 295
Target Start/End: Original strand, 23178240 - 23178271
Alignment:
| Q |
264 |
tccaaattcagcacatcaacaacacaacaaca |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
23178240 |
tccaaattcagcacatcaacaacacaacaaca |
23178271 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 295
Target Start/End: Original strand, 23589497 - 23589528
Alignment:
| Q |
264 |
tccaaattcagcacatcaacaacacaacaaca |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
23589497 |
tccaaattcagcacatcaacaacacaacaaca |
23589528 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 8e-19; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 345 - 451
Target Start/End: Complemental strand, 25786681 - 25786577
Alignment:
| Q |
345 |
tctctcttccaatccattcatagaaacataacnnnnnnnnnnttgaattcttgcttttt-tctcttccctttccctcaaatgtgtggtactgtaatcaca |
443 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||| ||||||||| ||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
25786681 |
tctctcttccaatccattcataaaaacataacaaaaaaa---ttgaattgttgctttttctctcttccctttctctcaaatgtgcggtactgtaatcaca |
25786585 |
T |
 |
| Q |
444 |
cataatca |
451 |
Q |
| |
|
|||||||| |
|
|
| T |
25786584 |
cataatca |
25786577 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 183 - 264
Target Start/End: Complemental strand, 26055778 - 26055691
Alignment:
| Q |
183 |
ccagaaatcatcatcattagcagcaacaacaca------aatcaaattcaacccattttaattcttttcatcatcatcttcatgaatt |
264 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||||||||||| |||| |||||||||||||||||| ||||||||| |
|
|
| T |
26055778 |
ccagaaatcatcatcaatagcagcaacaacacatcaagaaatcaaattcaaccctttttgattcttttcatcatcatcatcatgaatt |
26055691 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 253
Target Start/End: Complemental strand, 25786805 - 25786767
Alignment:
| Q |
215 |
aaatcaaattcaacccattttaattcttttcatcatcat |
253 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
25786805 |
aaatcatattcaacccattttaattcttttcatcatcat |
25786767 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 254
Target Start/End: Original strand, 1616503 - 1616542
Alignment:
| Q |
215 |
aaatcaaattcaacccattttaattcttttcatcatcatc |
254 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
1616503 |
aaatcaaattcaacccttttgaattcttttcatcatcatc |
1616542 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1974 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold1974
Description:
Target: scaffold1974; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 183 - 264
Target Start/End: Complemental strand, 282 - 196
Alignment:
| Q |
183 |
ccagaaatcatcatcattagcagcaacaacaca------aatcaaattcaacccattttaattcttttcatcatcatcttcatgaatt |
264 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
282 |
ccagaaatcatcatcaatag-agcaacaacacatcaagaaatcaaattcaaccctttttaattcttttcatcatcatcatcatgaatt |
196 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1974; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 295
Target Start/End: Complemental strand, 178 - 147
Alignment:
| Q |
264 |
tccaaattcagcacatcaacaacacaacaaca |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
178 |
tccaaattcagcacatcaacaacacaacaaca |
147 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1878 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold1878
Description:
Target: scaffold1878; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 183 - 264
Target Start/End: Original strand, 992 - 1078
Alignment:
| Q |
183 |
ccagaaatcatcatcattagcagcaacaacaca------aatcaaattcaacccattttaattcttttcatcatcatcttcatgaatt |
264 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
992 |
ccagaaatcatcatcaatag-agcaacaacacatcaagaaatcaaattcaaccctttttaattcttttcatcatcatcatcatgaatt |
1078 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1878; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 295
Target Start/End: Original strand, 1096 - 1127
Alignment:
| Q |
264 |
tccaaattcagcacatcaacaacacaacaaca |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
1096 |
tccaaattcagcacatcaacaacacaacaaca |
1127 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0290 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0290
Description:
Target: scaffold0290; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 183 - 264
Target Start/End: Complemental strand, 9194 - 9108
Alignment:
| Q |
183 |
ccagaaatcatcatcattagcagcaacaacaca------aatcaaattcaacccattttaattcttttcatcatcatcttcatgaatt |
264 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
9194 |
ccagaaatcatcatcaatag-agcaacaacacatcaagaaatcaaattcaaccctttttaattcttttcatcatcatcatcatgaatt |
9108 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0290; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 295
Target Start/End: Complemental strand, 9090 - 9059
Alignment:
| Q |
264 |
tccaaattcagcacatcaacaacacaacaaca |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
9090 |
tccaaattcagcacatcaacaacacaacaaca |
9059 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 345 - 451
Target Start/End: Complemental strand, 145403 - 145299
Alignment:
| Q |
345 |
tctctcttccaatccattcatagaaacataacnnnnnnnnnnttgaattcttgcttttt-tctcttccctttccctcaaatgtgtggtactgtaatcaca |
443 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||| |||||||||| |||||| ||||||| |
|
|
| T |
145403 |
tctctcttccaatccattcatagaaacataacaaaaaaa---ttgaattgttgctttttctctcttccctttctctcaaatgtgcggtactataatcacg |
145307 |
T |
 |
| Q |
444 |
cataatca |
451 |
Q |
| |
|
|||||||| |
|
|
| T |
145306 |
cataatca |
145299 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 253
Target Start/End: Complemental strand, 145529 - 145491
Alignment:
| Q |
215 |
aaatcaaattcaacccattttaattcttttcatcatcat |
253 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
145529 |
aaatcatattcaacccattttaattcttttcatcatcat |
145491 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 185 - 264
Target Start/End: Complemental strand, 34083876 - 34083791
Alignment:
| Q |
185 |
agaaatcatcatcattagcagcaacaacaca------aatcaaattcaacccattttaattcttttcatcatcatcttcatgaatt |
264 |
Q |
| |
|
|||||| ||||||| |||||||||||||||| ||||||||||||||| |||| |||||||||||||||||| ||||||||| |
|
|
| T |
34083876 |
agaaattatcatcaatagcagcaacaacacatcaagaaatcaaattcaacccttttttattcttttcatcatcatcatcatgaatt |
34083791 |
T |
 |
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Target: scaffold0051 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 185 - 259
Target Start/End: Complemental strand, 39548 - 39468
Alignment:
| Q |
185 |
agaaatcatcatcattagcagcaacaacaca------aatcaaattcaacccattttaattcttttcatcatcatcttcat |
259 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||| ||||||| |||| |||||||||||||||||| |||| |
|
|
| T |
39548 |
agaaatcatcatcaatagcagcaacaacacatcaagaaatcaaagtcaacccttttttattcttttcatcatcatcatcat |
39468 |
T |
 |
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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 264
Target Start/End: Original strand, 18694113 - 18694154
Alignment:
| Q |
223 |
ttcaacccattttaattcttttcatcatcatcttcatgaatt |
264 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
18694113 |
ttcatccctttttaattcttttcatcatcatcatcatgaatt |
18694154 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 330 - 370
Target Start/End: Original strand, 21388184 - 21388224
Alignment:
| Q |
330 |
tctctctcttccctttctctcttccaatccattcatagaaa |
370 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
21388184 |
tctctctcttccctttctcttatccaaaccattcatagaaa |
21388224 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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