View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3779_low_5 (Length: 347)
Name: NF3779_low_5
Description: NF3779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3779_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 2 - 339
Target Start/End: Original strand, 29631610 - 29631949
Alignment:
| Q |
2 |
gatgagaatatcaattactatacaaagagaatatcaattatataccccttgtacttagtaatcaattgctatctttgcttataatgtgaaacacctgtgg |
101 |
Q |
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| T |
29631610 |
gatgagaatatcaattactatataaagagaatatcaattatataccccttgtacttagtaatcaattgctatctttgcttataatgtgaaacacctgtgg |
29631709 |
T |
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| Q |
102 |
tgccagacagagaattacatgaaaatttaaaatgaaaaatccacaagcaaccagctactcattaatatatattggattttcttctacttatatccgggtt |
201 |
Q |
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| T |
29631710 |
tgccagacagagaattacatgaaaatttaaaatgaaaaatccacaagcaaccagctactcgttaatatatattggatttttttctacttatatccgggtt |
29631809 |
T |
|
| Q |
202 |
ttggcaatcagagtaacactcattcaccaagtcaaatagaacatagatacaactcgagttgaatcaagcagcatct--acacacacacatgtaaaagaaa |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
29631810 |
ttggcaatcagagtaacactcattcaccaagtcaaatagaacatagatacaactcgagttgaatcaagcaacatctacacacacacacatgtaaaagaaa |
29631909 |
T |
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| Q |
300 |
accataaaattattattttctcattgcctcatgatgatgt |
339 |
Q |
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| T |
29631910 |
accataaaattattattttctcattgcctcatgatgatgt |
29631949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 97
Target Start/End: Original strand, 29650672 - 29650719
Alignment:
| Q |
50 |
ttgtacttagtaatcaattgctatctttgcttataatgtgaaacacct |
97 |
Q |
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| T |
29650672 |
ttgtacttggtaatcaattgatatctttgtttataatgtgaaacacct |
29650719 |
T |
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