View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3779_low_6 (Length: 344)

Name: NF3779_low_6
Description: NF3779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3779_low_6
NF3779_low_6
[»] chr5 (1 HSPs)
chr5 (31-327)||(22050229-22050526)


Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 31 - 327
Target Start/End: Original strand, 22050229 - 22050526
Alignment:
Q  31 ttgtgttcaagtaagatataa-ggaacttactaatttaaattttgcggctgaaaactttgtgagggtaacttgaaatggtgccggctcaagcgcactgta 129  Q
    ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22050229 ttgtgttcaagtaagatataaaggaacttactaatttaaatttttcggctgaaaactttgtgagggtaacttgaaatggtgccggctcaagcgcactgta 22050328  T
Q  130 tcgatagctatgataatttggtaattccaaaggattgaattgacgttgtcctacatcaataccaaatagattttctccatgatatgtgagtaaaagaaac 229  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22050329 tcgatagctatgataatttcataattccaaaggattgaattgacgttgtcctacatcaataccaaatagattttctccatgatatgtgagtaaaagaaac 22050428  T
Q  230 ccgttgccattgataccnnnnnnngttctcaactcaatccatccttttgtgattaatggatgattgtagttttgattgaactcgacattgatgcaacg 327  Q
    | |||||||||||||||       | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  22050429 ctgttgccattgataccaaaaaaagctctcaactcaatccatccttttgtgattaatggatgattgtagttttgattgaactcgacattcatgcaacg 22050526  T

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