View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3779_low_7 (Length: 294)
Name: NF3779_low_7
Description: NF3779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3779_low_7 |
 | |
|
| [»] scaffold0083 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 23)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 4 - 278
Target Start/End: Complemental strand, 10665989 - 10665718
Alignment:
| Q |
4 |
aaatataaatggaatccagactcctacaattctttatccaaagtgtttggaggacagggaaaccatcaagtggaaaggatgtaagtgtgtacttacaact |
103 |
Q |
| |
|
||||| |||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||| |
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|
| T |
10665989 |
aaatacaaatggaaaccagactcctacaattctgtatccaaagtgtttggagcgcagggaaaccatcaagtggaaaggatgtaagtgcatc---acaact |
10665893 |
T |
|
| Q |
104 |
tctccataaatgaagactcacaagtgatgtgtaattgctccacgtttcaggaggaaggaaggataaattcttacacgaccaaatatcaagtgattgcaat |
203 |
Q |
| |
|
| ||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| || |||||| ||||||||||||| |
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|
| T |
10665892 |
ttgacataaatctagacgcacaagtgatgtgtaattgctccacgtttcaggaggtaggaaggataaattctcacaccacaaaatattaagtgattgcaat |
10665793 |
T |
|
| Q |
204 |
gaagtgggtagaccacttgagggaaatgcagtgagagaaggaagagaattgagttccaagtgtgtaagacaagtg |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| |||| |||| |||||||||||||||||||| |
|
|
| T |
10665792 |
gaagtgggtagaccacttgagggaaatgcagtgagagaagaaagtgaatagagtgccaagtgtgtaagacaagtg |
10665718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 10034529 - 10034255
Alignment:
| Q |
1 |
ctgaaatataaatggaatccagactcctacaattctttatccaaagtgtttggaggacagggaaaccatcaagtggaaaggatgtaagtgtgtacttaca |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
10034529 |
ctgaaatataaatggaaaccagactcctacaattccatatctgaagtgtttggaggacagggaaaccatcaagtggaaaggatgtaagtgcatc---aca |
10034433 |
T |
|
| Q |
101 |
acttctccataaatgaagactcacaagtgatgtgtaattgctccacgtttcaggaggaaggaaggataaattcttacacgaccaaatatcaagtgattgc |
200 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||| |||||||||| |
|
|
| T |
10034432 |
actatgaattaaataaagactcacaagtgatgtgtaattgctccacgtttcaggaggtaggaaggataaattctcacattttacaatatgaagtgattgc |
10034333 |
T |
|
| Q |
201 |
aatgaagtgggtagaccacttgagggaaatgcagtgagagaaggaagagaattgagttccaagtgtgtaagacaagtg |
278 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10034332 |
aatgaagtgggtagtccacttgagggaaatgcagtgagagaagaaagagaattgagttccaagtgtgtaagacaagtg |
10034255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 10373385 - 10373659
Alignment:
| Q |
1 |
ctgaaatataaatggaatccagactcctacaattctttatccaaagtgtttggaggacagggaaaccatcaagtggaaaggatgtaagtgtgtacttaca |
100 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||| | | ||| |
|
|
| T |
10373385 |
ctgaaatacaaatggaatccagattcctacaattcagtatcataagtgtttggaggacagggaaaccatcaagtggaaaggatataagtg---aatcaca |
10373481 |
T |
|
| Q |
101 |
acttctccataaatgaagactcacaagtgatgtgtaattgctccacgtttcaggaggaaggaaggataaattcttacacgaccaaatatcaagtgattgc |
200 |
Q |
| |
|
|| | |||||| ||| | ||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||| | | ||| |||||||||||| |
|
|
| T |
10373482 |
gctacgatataaataaagccacacaagtgatgtgtaattgctccacatttcaagaggaaggaaggataaattctcacagtatctaatttcaagtgattgc |
10373581 |
T |
|
| Q |
201 |
aatgaagtgggtagaccacttgagggaaatgcagtgagagaaggaagagaattgagttccaagtgtgtaagacaagtg |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
10373582 |
aatgaagtgggtagaccacttgagggaaatgcagtgagagaagaaagagaatcgagttccaagtgtgtaagacaagtg |
10373659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 10129451 - 10129177
Alignment:
| Q |
1 |
ctgaaatataaatggaatccagactcctacaattctttatccaaagtgtttggaggacagggaaaccatcaagtggaaaggatgtaagtgtgtacttaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||| |||||||||||| ||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
10129451 |
ctgaaatataaatggaatccagactcctacaattatgtatggtaagtgtttggagcgcagggaaaccatcaagtggaaaggatgtaagtgcatc---aca |
10129355 |
T |
|
| Q |
101 |
acttctccataaatgaagactcacaagtgatgtgtaattgctccacgtttcaggaggaaggaaggataaattcttacacgaccaaatatcaagtgattgc |
200 |
Q |
| |
|
||| |||| ||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||| |||||||||| |
|
|
| T |
10129354 |
actactccgtaaatcaatactcacaagtgatgtgtaattgctccacgtttcaggaggtaggaaggataaattctcacatttttcaatatgaagtgattgc |
10129255 |
T |
|
| Q |
201 |
aatgaagtgggtagaccacttgagggaaatgcagtgagagaaggaagagaattgagttccaagtgtgtaagacaagtg |
278 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||| |
|
|
| T |
10129254 |
aatgaagtgggtagtccacttgagggaaatgcagtgagagaagaaagagaatagagtctcaagtgtgtaagacaagtg |
10129177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 9841384 - 9841110
Alignment:
| Q |
1 |
ctgaaatataaatggaatccagactcctacaattctttatccaaagtgtttggaggacagggaaaccatcaagtggaaaggatgtaagtgtgtacttaca |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||| |||||||||||| ||||||||||||||||||| |||||||||||||| | ||| |
|
|
| T |
9841384 |
ctgaaatataaatggaatctagactcctacaatcaagtatggtaagtgtttggagcgcagggaaaccatcaagtgggaaggatgtaagtgtatc---aca |
9841288 |
T |
|
| Q |
101 |
acttctccataaatgaagactcacaagtgatgtgtaattgctccacgtttcaggaggaaggaaggataaattcttacacgaccaaatatcaagtgattgc |
200 |
Q |
| |
|
|| | |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| | ||||| |||||||||| |
|
|
| T |
9841287 |
gctccaccataactgaagactcacaagtgatgtgtaattgctccacgtttcaggaggtaggaaggataaattctcacaactacgaatatgaagtgattgc |
9841188 |
T |
|
| Q |
201 |
aatgaagtgggtagaccacttgagggaaatgcagtgagagaaggaagagaattgagttccaagtgtgtaagacaagtg |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||| |
|
|
| T |
9841187 |
aatgaagtgggtagaccacttgagggaaatgcagtgagagaagaaagagaatcgagtctcaagtgtgtaagacaagtg |
9841110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 10431584 - 10431858
Alignment:
| Q |
1 |
ctgaaatataaatggaatccagactcctacaattctttatccaaagtgtttggaggacagggaaaccatcaagtggaaaggatgtaagtgtgtacttaca |
100 |
Q |
| |
|
||||||||||||||||||||||||| || ||||| ||| |||| ||||||| ||||||||||||| ||||||||||||||||||| | | ||| |
|
|
| T |
10431584 |
ctgaaatataaatggaatccagacttctgcaattaaatatgtcaagtaattggagggcagggaaaccatcgagtggaaaggatgtaagtg---aatcaca |
10431680 |
T |
|
| Q |
101 |
acttctccataaatgaagactcacaagtgatgtgtaattgctccacgtttcaggaggaaggaaggataaattcttacacgaccaaatatcaagtgattgc |
200 |
Q |
| |
|
||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||| |||||||||||| |
|
|
| T |
10431681 |
actgctccataaataaagactgacaagtgatgtgtaattgctccacgtttcaggaggtaggaaggataaattctcacatttttcaatttcaagtgattgc |
10431780 |
T |
|
| Q |
201 |
aatgaagtgggtagaccacttgagggaaatgcagtgagagaaggaagagaattgagttccaagtgtgtaagacaagtg |
278 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||| ||||||||||||||||||| |
|
|
| T |
10431781 |
aatgaagtgggtagaccacttgatggaaatgcagtgagagaagaaagagaatcgagtctcaagtgtgtaagacaagtg |
10431858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 4 - 278
Target Start/End: Complemental strand, 10263224 - 10262953
Alignment:
| Q |
4 |
aaatataaatggaatccagactcctacaattctttatccaaagtgtttggaggacagggaaaccatcaagtggaaaggatgtaagtgtgtacttacaact |
103 |
Q |
| |
|
|||||||||||||||||||||| ||||| || | ||| ||||||||||||| ||||||||||||| ||||||||||||||||||| | | ||| || |
|
|
| T |
10263224 |
aaatataaatggaatccagacttctacacttatatatgtcaagtgtttggagggcagggaaaccatcgagtggaaaggatgtaagtg---aatcacagct |
10263128 |
T |
|
| Q |
104 |
tctccataaatgaagactcacaagtgatgtgtaattgctccacgtttcaggaggaaggaaggataaattcttacacgaccaaatatcaagtgattgcaat |
203 |
Q |
| |
|
| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||| |
|
|
| T |
10263127 |
acgatttaactcaagactcacaagtgatgtgtaattgctccacgtttcaggaggaaggaaggataaattctcacaatttacaatttcaagtgattgcaat |
10263028 |
T |
|
| Q |
204 |
gaagtgggtagaccacttgagggaaatgcagtgagagaaggaagagaattgagttccaagtgtgtaagacaagtg |
278 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||| ||||||||| |
|
|
| T |
10263027 |
gaagtgggtagaccacttgagggaaatgtagtgagagaaggaagagaactgagtttcaagtgtgttagacaagtg |
10262953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 10520011 - 10519737
Alignment:
| Q |
1 |
ctgaaatataaatggaatccagactcctacaattctttatccaaagtgtttggaggacagggaaaccatcaagtggaaaggatgtaagtgtgtacttaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| || | ||| |||||||||||| ||||||||||||| |||||||||||||||||||| | ||| |
|
|
| T |
10520011 |
ctgaaatataaatggaatccagactcctgcactcacatatggtaagtgtttggagcgcagggaaaccatcgagtggaaaggatgtaagtgtatc---aca |
10519915 |
T |
|
| Q |
101 |
acttctccataaatgaagactcacaagtgatgtgtaattgctccacgtttcaggaggaaggaaggataaattcttacacgaccaaatatcaagtgattgc |
200 |
Q |
| |
|
|| | | || | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| | ||||| |||||||||| |
|
|
| T |
10519914 |
gctacgatagaacttaagactcacaagtgatgtgtaattgatccacgtttcaggaggaaggaaggataaattctcacaacattgaatattaagtgattgc |
10519815 |
T |
|
| Q |
201 |
aatgaagtgggtagaccacttgagggaaatgcagtgagagaaggaagagaattgagttccaagtgtgtaagacaagtg |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||| |
|
|
| T |
10519814 |
aatgaagtgggtagaccacttgagggaaatgcagtgagagaagaaagagaatcgagtcccaagtgtgtaagacaagtg |
10519737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 4 - 275
Target Start/End: Original strand, 11779528 - 11779796
Alignment:
| Q |
4 |
aaatataaatggaatccagactcctacaattctttatccaaagtgtttggaggacagggaaaccatcaagtggaaaggatgtaagtgtgtacttacaact |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||| ||||||||||||| | |||||| |
|
|
| T |
11779528 |
aaatataaatggaatccagactcctacaatcacttaagtcaagtgtttggagcacagggaaaccatcaagtgggaaggatgtaagtgcatc---acaact |
11779624 |
T |
|
| Q |
104 |
tctccataaatgaagactcacaagtgatgtgtaattgctccacgtttcaggaggaaggaaggataaattcttacacgaccaaatatcaagtgattgcaat |
203 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||||||||||||| ||| || |||||||| |||| ||| ||||| ||||||||||||| |
|
|
| T |
11779625 |
actccataaataaagactcacaagtgaagtgtaattgctccacgtttcagaaggtagaaaggataagttctcacaatctttaatatgaagtgattgcaat |
11779724 |
T |
|
| Q |
204 |
gaagtgggtagaccacttgagggaaatgcagtgagagaaggaagagaattgagttccaagtgtgtaagacaa |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||| |||||||||| |
|
|
| T |
11779725 |
gaagtgggtagaccacttgagggaaatgcagtgagagaagaaagagaatggagtctcaagtatgtaagacaa |
11779796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 10361344 - 10361618
Alignment:
| Q |
1 |
ctgaaatataaatggaatccagactcctacaattctttatccaaagtgtttggaggacagggaaaccatcaagtggaaaggatgtaagtgtgtacttaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| ||||||| |||| ||||||||||||| ||||||||||||||||||| | ||| |
|
|
| T |
10361344 |
ctgaaatataaatggaatccagactcctacaatcacgtatggtaagtgttcggagcgcagggaaaccatcgagtggaaaggatgtaagtg---aaccaca |
10361440 |
T |
|
| Q |
101 |
acttctccataaatgaagactcacaagtgatgtgtaattgctccacgtttcaggaggaaggaaggataaattcttacacgaccaaatatcaagtgattgc |
200 |
Q |
| |
|
|| |||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||| |||||||||| |
|
|
| T |
10361441 |
gctatgatctaaatgtagagtcacaagtgatgtgtaattgctccacgtttcaggaggtaggaaggataaattctcacaattttcaatatgaagtgattgc |
10361540 |
T |
|
| Q |
201 |
aatgaagtgggtagaccacttgagggaaatgcagtgagagaaggaagagaattgagttccaagtgtgtaagacaagtg |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| | |||| ||||| |||||||||||||| |
|
|
| T |
10361541 |
aatgaagtgggtagaccacttgagggaaatgcagtgagagaagaaagattaccgagtcccaagagtgtaagacaagtg |
10361618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 43 - 278
Target Start/End: Complemental strand, 10583095 - 10582863
Alignment:
| Q |
43 |
aaagtgtttggaggacagggaaaccatcaagtggaaaggatgtaagtgtgtacttacaacttctccataaatgaagactcacaagtgatgtgtaattgct |
142 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||||||| | | ||| || | | || | ||||||||||||||||||||| ||||| |
|
|
| T |
10583095 |
aaagtgttcggagcgcagggaaaccatcaagtggaaaggatgtaagtg---aatcacagctacgatagaactaaagactcacaagtgatgtgtagttgct |
10582999 |
T |
|
| Q |
143 |
ccacgtttcaggaggaaggaaggataaattcttacacgaccaaatatcaagtgattgcaatgaagtgggtagaccacttgagggaaatgcagtgagagaa |
242 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
10582998 |
ccacgtttcaggaggtaggaaggataaattctcacaattttcgatatgaagtgattgcaatgaagtgggtagaccacttgagggaaatgtagtgagagaa |
10582899 |
T |
|
| Q |
243 |
ggaagagaattgagttccaagtgtgtaagacaagtg |
278 |
Q |
| |
|
| |||||||| |||| ||||||||||||||||||| |
|
|
| T |
10582898 |
gaaagagaatagagtctcaagtgtgtaagacaagtg |
10582863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 4 - 278
Target Start/End: Complemental strand, 9852262 - 9851991
Alignment:
| Q |
4 |
aaatataaatggaatccagactcctacaattctttatccaaagtgtttggaggacagggaaaccatcaagtggaaaggatgtaagtgtgtacttacaact |
103 |
Q |
| |
|
|||||||||||||||||||||| || |||| | || |||||||||||| |||||||||||||| |||||||||||| |||||| | | ||| || |
|
|
| T |
9852262 |
aaatataaatggaatccagacttctccaatcatcaatgtcaagtgtttggagcacagggaaaccatcgagtggaaaggatttaagtg---aatcacagct |
9852166 |
T |
|
| Q |
104 |
tctccataaatgaagactcacaagtgatgtgtaattgctccacgtttcaggaggaaggaaggataaattcttacacgaccaaatatcaagtgattgcaat |
203 |
Q |
| |
|
| | || |||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
9852165 |
acgatagaaccgaagactcacaagtgatgtgtagttgctccatgtttcaggaggtaggaaggataaattctcacaattttcaatatcaagtgattgcaat |
9852066 |
T |
|
| Q |
204 |
gaagtgggtagaccacttgagggaaatgcagtgagagaaggaagagaattgagttccaagtgtgtaagacaagtg |
278 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||| ||| |||| |||| ||||||||||||||||||| |
|
|
| T |
9852065 |
gaagtgggtagaccacttgatggaaatgcattgagagaagaaagtgaatcgagtctcaagtgtgtaagacaagtg |
9851991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 58 - 278
Target Start/End: Complemental strand, 11771703 - 11771486
Alignment:
| Q |
58 |
cagggaaaccatcaagtggaaaggatgtaagtgtgtacttacaacttctccataaatgaagactcacaagtgatgtgtaattgctccacgtttcaggagg |
157 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||| |||||||||| ||||||||||||||| ||||||| |||||||||||||| ||| |
|
|
| T |
11771703 |
cagggaaaccatcaagtggaaaggatgtaagtgcatc---acaactactccataaataaagactcacaagtgaagtgtaatagctccacgtttcagaagg |
11771607 |
T |
|
| Q |
158 |
aaggaaggataaattcttacacgaccaaatatcaagtgattgcaatgaagtgggtagaccacttgagggaaatgcagtgagagaaggaagagaattgagt |
257 |
Q |
| |
|
|| |||||||| |||| ||| ||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||| |
|
|
| T |
11771606 |
tagaaaggataagttctcacaatctttaatatgaagtatttgcaatgaagtgggtagaccacttgggggaaatgcagtgagagaagaaagagaatggagt |
11771507 |
T |
|
| Q |
258 |
tccaagtgtgtaagacaagtg |
278 |
Q |
| |
|
||||| ||||||||||||| |
|
|
| T |
11771506 |
ctcaagtatgtaagacaagtg |
11771486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 58 - 278
Target Start/End: Complemental strand, 10091263 - 10091046
Alignment:
| Q |
58 |
cagggaaaccatcaagtggaaaggatgtaagtgtgtacttacaacttctccataaatgaagactcacaagtgatgtgtaattgctccacgtttcaggagg |
157 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||| || | ||||| ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10091263 |
cagggaaaccatcaagtggaaaggatgtaagtgcatc---acagctatgacttaaataaagtctcacaagtgatgtgtaattgctccacgtttcaggagg |
10091167 |
T |
|
| Q |
158 |
aaggaaggataaattcttacacgaccaaatatcaagtgattgcaatgaagtgggtagaccacttgagggaaatgcagtgagagaaggaagagaattgagt |
257 |
Q |
| |
|
||||||||||||||| ||| | ||| |||| ||||||||||||||||||||||||||||||||| ||||| | || ||| | |||||||| |||| |
|
|
| T |
10091166 |
taggaaggataaattcaaacaaaattcaatttcaattgattgcaatgaagtgggtagaccacttgagggtaatgcggcgatagatgaaagagaatagagt |
10091067 |
T |
|
| Q |
258 |
tccaagtgtgtaagacaagtg |
278 |
Q |
| |
|
| ||||||| |||||||||| |
|
|
| T |
10091066 |
ttcaagtgttgaagacaagtg |
10091046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 58 - 278
Target Start/End: Complemental strand, 10198145 - 10197928
Alignment:
| Q |
58 |
cagggaaaccatcaagtggaaaggatgtaagtgtgtacttacaacttctccataaatgaagactcacaagtgatgtgtaattgctccacgtttcaggagg |
157 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||| || | ||||| ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10198145 |
cagggaaaccatcaagtggaaaggatgtaagtgcatc---acagctatgacttaaataaagtctcacaagtgatgtgtaattgctccacgtttcaggagg |
10198049 |
T |
|
| Q |
158 |
aaggaaggataaattcttacacgaccaaatatcaagtgattgcaatgaagtgggtagaccacttgagggaaatgcagtgagagaaggaagagaattgagt |
257 |
Q |
| |
|
||||||||||||||| ||| | ||| |||| ||||||||||||||||||||||||||||||||| ||||| | || ||| | |||||||| |||| |
|
|
| T |
10198048 |
taggaaggataaattcaaacaaaattcaatttcaattgattgcaatgaagtgggtagaccacttgagggtaatgcggcgatagatgaaagagaatagagt |
10197949 |
T |
|
| Q |
258 |
tccaagtgtgtaagacaagtg |
278 |
Q |
| |
|
| ||||||| |||||||||| |
|
|
| T |
10197948 |
ttcaagtgttgaagacaagtg |
10197928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 246
Target Start/End: Original strand, 13853007 - 13853246
Alignment:
| Q |
4 |
aaatataaatggaatccagactcctacaattctttatccaaagtgtttggaggacagggaaaccatcaagtggaaaggatgtaagtgtgtacttacaact |
103 |
Q |
| |
|
|||||| ||||||||||||| ||||||| | |||||| |||| ||||||| ||||||||||||||||| | ||||||||||||| | ||| || |
|
|
| T |
13853007 |
aaatattaatggaatccagattcctacactcacttatccgaagtctttggagtgcagggaaaccatcaagttggaaggatgtaagtgcatc---acagct |
13853103 |
T |
|
| Q |
104 |
tctccataaatgaagactcacaagtgatgtgtaattgctccacgtttcaggaggaaggaaggataaattcttacacgaccaaatatcaagtgattgcaat |
203 |
Q |
| |
|
|||| |||| ||||||| |||| ||||||||||||||||| ||||||||||||||||| |||||||||| ||| || ||||||||||||||| |
|
|
| T |
13853104 |
actccgtaaagtaagactcgcaagcgatgtgtaattgctccatgtttcaggaggaaggaatgataaattctcacatttttctatttcaagtgattgcaat |
13853203 |
T |
|
| Q |
204 |
gaagtgggtagaccacttgagggaaatgcagtgagagaaggaa |
246 |
Q |
| |
|
| ||| || ||||||||||| |||||| |||||||||| |||| |
|
|
| T |
13853204 |
ggagttggcagaccacttgacggaaatacagtgagagatggaa |
13853246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 44 - 278
Target Start/End: Complemental strand, 10503065 - 10502834
Alignment:
| Q |
44 |
aagtgtttggaggacagggaaaccatcaagtggaaaggatgtaagtgtgtacttacaacttctccataaatgaagactcacaagtgatgtgtaattgctc |
143 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||||||| ||| | ||| || |||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
10503065 |
aagtctttggagtgcagggaaaccatcaagtggaaaggatgttagtccatc---acagctactccataaatcaagactcacaagcaatgtgtaattgctc |
10502969 |
T |
|
| Q |
144 |
cacgtttcaggaggaaggaaggataaattcttacacgaccaaatatcaagtgattgcaatgaagtgggtagaccacttgagggaaatgcagtgagagaag |
243 |
Q |
| |
|
|||||||||| |||||| ||||||||||||| |||| |||| |||||| ||||| ||||||||||||||| | |||||| |||||||||| | |
|
|
| T |
10502968 |
cacgtttcagcaggaagaaaggataaattctcacaccttttaatactaagtgactgcaaagaagtgggtagaccatctttgggaaacacagtgagagatg |
10502869 |
T |
|
| Q |
244 |
gaagagaattgagttccaagtgtgtaagacaagtg |
278 |
Q |
| |
|
||| | || ||||||||||||| |||||||||| |
|
|
| T |
10502868 |
gaatatcatagagttccaagtgttgaagacaagtg |
10502834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 277
Target Start/End: Original strand, 10967364 - 10967519
Alignment:
| Q |
122 |
cacaagtgatgtgtaattgctccacgtttcaggaggaaggaaggataaattcttacacgaccaaatatcaagtgattgcaatgaagtgggtagaccactt |
221 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||| | ||| | |||||||||||| ||||||||||||| | |||||||||||| || ||| | |
|
|
| T |
10967364 |
cacaagtgatgtgtaattgctccacatttccggaggcaagaatgctaaattcttacagtcggaaatatcaagtgacttcaatgaagtgggaagtccatta |
10967463 |
T |
|
| Q |
222 |
gagggaaatgcagtgagagaaggaagagaattgagttccaagtgtgtaagacaagt |
277 |
Q |
| |
|
|| | ||||||||||||||| | || | || |||||| ||||||| ||||||||| |
|
|
| T |
10967464 |
gatgaaaatgcagtgagagaggaaatataaatgagttgcaagtgttgaagacaagt |
10967519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 246
Target Start/End: Original strand, 11244188 - 11244308
Alignment:
| Q |
126 |
agtgatgtgtaattgctccacgtttcaggaggaaggaaggataaattcttacacgaccaaatatcaagtgattgcaatgaagtgggtagaccacttgagg |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| | ||| | | ||| | ||||| ||||| |||||| ||||||||||||||| ||| | |
|
|
| T |
11244188 |
agtgatgtgtaattgctccacgtttcaggaggtaggaatgttaagctgtcacaattgcgaatatgaagtgtttgcaaagaagtgggtagaccatttgtag |
11244287 |
T |
|
| Q |
226 |
gaaatgcagtgagagaaggaa |
246 |
Q |
| |
|
|||||||||||||||| |||| |
|
|
| T |
11244288 |
gaaatgcagtgagagatggaa |
11244308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 121 - 278
Target Start/End: Complemental strand, 13397889 - 13397732
Alignment:
| Q |
121 |
tcacaagtgatgtgtaattgctccacgtttcaggaggaaggaaggataaattcttacacgaccaaatatcaagtgattgcaatgaagtgggtagaccact |
220 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| | | ||| | |||||||| |||| ||| |||||| ||||| |||||||| |||||| | |
|
|
| T |
13397889 |
tcacaagtgatgtgtaattgctccatgtttcaggacgcaagaatgctaaattctgacactcatctatacgaagtgactgcaacgaagtgggaagaccatt |
13397790 |
T |
|
| Q |
221 |
tgagggaaatgcagtgagagaaggaagagaattgagttccaagtgtgtaagacaagtg |
278 |
Q |
| |
|
|| ||||||||||||||||| | || | || |||| ||||||||| |||||||||| |
|
|
| T |
13397789 |
tgctggaaatgcagtgagagaggaaatataaatgagatccaagtgttgaagacaagtg |
13397732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 218
Target Start/End: Complemental strand, 10531130 - 10530973
Alignment:
| Q |
58 |
cagggaaaccatcaagtggaaaggatgtaagtgtgtacttacaacttctccataaatgaagactcacaagtgatgtgtaattgctccacgtttcaggagg |
157 |
Q |
| |
|
||||||||||||||||| | ||||||||||||| | ||| || ||||||||| ||||||| |||| |||||||| ||||||||||||||||||| |
|
|
| T |
10531130 |
cagggaaaccatcaagttggaaggatgtaagtgcatc---acagctactccataaaataagactctcaagcgatgtgtatctgctccacgtttcaggagg |
10531034 |
T |
|
| Q |
158 |
aaggaaggataaattcttacacgaccaaatatcaagtgattgcaatgaagtgggtagacca |
218 |
Q |
| |
|
| ||| | ||| |||| ||| |||| |||||| ||||||||||||||||||||| |
|
|
| T |
10531033 |
catgaatgctaacttctcacaattatcaatacaaagtgactgcaatgaagtgggtagacca |
10530973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 157
Target Start/End: Complemental strand, 10679929 - 10679833
Alignment:
| Q |
58 |
cagggaaaccatcaagtggaaaggatgtaagtgtgtacttacaacttctccataaatgaagactcacaagtgatgtgtaattgctccacgtttcaggagg |
157 |
Q |
| |
|
||||||||||||||||| | ||||||||||||| | ||| || ||||||||| |||||||||||| ||||| || ||||||||||||||||||| |
|
|
| T |
10679929 |
cagggaaaccatcaagttggaaggatgtaagtgcatc---acagctactccataaaataagactcacaagcgatgtatatctgctccacgtttcaggagg |
10679833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 174
Target Start/End: Original strand, 11230092 - 11230137
Alignment:
| Q |
129 |
gatgtgtaattgctccacgtttcaggaggaaggaaggataaattct |
174 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| || |||||||||| |
|
|
| T |
11230092 |
gatgtgtaattgctccacgtatcaagaggaagaaacgataaattct |
11230137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 55145 - 55419
Alignment:
| Q |
1 |
ctgaaatataaatggaatccagactcctacaattctttatccaaagtgtttggaggacagggaaaccatcaagtggaaaggatgtaagtgtgtacttaca |
100 |
Q |
| |
|
|||||||| |||||||| ||||||||||||| | |||| ||||||||||||| ||||||||||||||||||||||||||||||||| | | ||| |
|
|
| T |
55145 |
ctgaaatacaaatggaaaccagactcctacatctacttatgtcaagtgtttggagggcagggaaaccatcaagtggaaaggatgtaagtg---aatcaca |
55241 |
T |
|
| Q |
101 |
acttctccataaatgaagactcacaagtgatgtgtaattgctccacgtttcaggaggaaggaaggataaattcttacacgaccaaatatcaagtgattgc |
200 |
Q |
| |
|
||| ||| || |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||| |||||||||| |
|
|
| T |
55242 |
actatatgatatattaagactgacaagtgatgtgtaattgctccacgtttcaggaggtaggaaggataaattctcacatttttcaatatgaagtgattgc |
55341 |
T |
|
| Q |
201 |
aatgaagtgggtagaccacttgagggaaatgcagtgagagaaggaagagaattgagttccaagtgtgtaagacaagtg |
278 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| ||| |||| ||||| ||||||||||||||||||| |
|
|
| T |
55342 |
aatgaagtgggtagtccacttgagggaaatgcagtgagagaagaaagtgaatggagtttcaagtgtgtaagacaagtg |
55419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 121 - 266
Target Start/End: Complemental strand, 26909297 - 26909152
Alignment:
| Q |
121 |
tcacaagtgatgtgtaattgctccacgtttcaggaggaaggaaggataaattcttacacgaccaaatatcaagtgattgcaatgaagtgggtagaccact |
220 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||| ||||||||||||||| ||| | ||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
26909297 |
tcacaagtgatgtgtaattgctccaggtttcaagaggtaggaaggataaattcaaacaaaattcaatttcaattgattgcaatgaagtgggtagaccact |
26909198 |
T |
|
| Q |
221 |
tgagggaaatgcagtgagagaaggaagagaattgagttccaagtgt |
266 |
Q |
| |
|
|||||| ||||| | || ||| | |||||||| ||||| ||||||| |
|
|
| T |
26909197 |
tgagggtaatgcggcgatagatgaaagagaatagagtttcaagtgt |
26909152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 26909414 - 26909382
Alignment:
| Q |
1 |
ctgaaatataaatggaatccagactcctacaat |
33 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |
|
|
| T |
26909414 |
ctgaaatataaatggaatccacactcctacaat |
26909382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 105 - 278
Target Start/End: Original strand, 17850570 - 17850743
Alignment:
| Q |
105 |
ctccataaatgaagactcacaagtgatgtgtaattgctccacgtttcaggaggaaggaaggataaattcttacacgaccaaatatcaagtgattgcaatg |
204 |
Q |
| |
|
|||||||| | ||||||| ||||||||||||||||| |||||||||||||||| | ||||||||||||||||||| | ||||| |||||| ||||||| |
|
|
| T |
17850570 |
ctccataactcaagactcgcaagtgatgtgtaattgttccacgtttcaggaggcatgaaggataaattcttacacatactaatatgaagtgactgcaatg |
17850669 |
T |
|
| Q |
205 |
aagtgggtagaccacttgagggaaatgcagtgagagaaggaagagaattgagttccaagtgtgtaagacaagtg |
278 |
Q |
| |
|
||||| || || || | ||||||||||||||||| |||| | ||||||| ||||||| |||||||||| |
|
|
| T |
17850670 |
aagtgagttgaacatccgtcggaaatgcagtgagagacggaatatcattgagtgtcaagtgttgaagacaagtg |
17850743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 174
Target Start/End: Complemental strand, 11487552 - 11487385
Alignment:
| Q |
4 |
aaatataaatggaatccagactcctacaattctttatccaaagtgtttggaggacagggaaaccatcaagtggaaaggatgtaagtgtgtacttacaact |
103 |
Q |
| |
|
||||| ||||||||||||||| |||||||| | || ||| ||||||| ||||||||||||||||||||||||||||||||| | ||| || |
|
|
| T |
11487552 |
aaataaaaatggaatccagacacctacaatcatatagttttagtctttggagcgcagggaaaccatcaagtggaaaggatgtaagtgcatc---acagct |
11487456 |
T |
|
| Q |
104 |
tctccataaatgaagactcacaagtgatgtgtaattgctccacgtttcaggaggaaggaaggataaattct |
174 |
Q |
| |
|
|| |||| | ||| |||||| || ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11487455 |
actaaataactcaagcgacacaagagacttgtaattgctccacgtttcaggaggaaggaatgataaattct |
11487385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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