View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3779_low_8 (Length: 264)
Name: NF3779_low_8
Description: NF3779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3779_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 9e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 82 - 248
Target Start/End: Original strand, 52775712 - 52775878
Alignment:
| Q |
82 |
aatatttattatcatatcaagcaaaatcatttaggtgttagtgttattactattttgtgtgaaacacatttcattcaataaaaaagtagtagttgaaaag |
181 |
Q |
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| T |
52775712 |
aatatttattatcatatcaagtaaaatcatttaggtgttagtgttattactattttgtgtgaaacacatttcattcaataaaaaagtagtagttgaaaag |
52775811 |
T |
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| Q |
182 |
agtattagaaaaatagtgttattaattattctctaggtcaatttggaagattaattctattgtccat |
248 |
Q |
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| T |
52775812 |
agtattagaaaaataatgttattaattattctctaggtcaatttggaagattaattctattgtccat |
52775878 |
T |
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Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 52770658 - 52770715
Alignment:
| Q |
10 |
aagaatattaactttaaatgaattgaatttgtgaagttgattttaaaagaaatgttat |
67 |
Q |
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| T |
52770658 |
aagaatattaactttaaatgaattgaatttgtaaagttgattttaaaagaaatgttat |
52770715 |
T |
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