View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3780_high_2 (Length: 416)
Name: NF3780_high_2
Description: NF3780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3780_high_2 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] chr1 (4 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 341 - 416
Target Start/End: Complemental strand, 51830253 - 51830178
Alignment:
| Q |
341 |
aaaagaattataaaattccaactcagcgtgccaactatgcatttttacccgatcagcacgccaaatcatcttcttt |
416 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
51830253 |
aaaagaattagaaaattccaactcagcgtgtcaattatgcatttttacccggtcagcacgccaaatcatcttcttt |
51830178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 340 - 416
Target Start/End: Original strand, 37183192 - 37183267
Alignment:
| Q |
340 |
gaaaagaattataaaattccaactcagcgtgccaactatgcatttttacccgatcagcacgccaaatcatcttcttt |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||| ||||||||||||||| |
|
|
| T |
37183192 |
gaaaagaattataaaattccaactcagcgtgccaactttgcatttttacccaatca-cacgtcaaatcatcttcttt |
37183267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 74 - 135
Target Start/End: Original strand, 37182919 - 37182980
Alignment:
| Q |
74 |
atagaaggaagatgatgaatttggaaaggtgagtgactttgttaaaggattgtgttgttgtt |
135 |
Q |
| |
|
||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
37182919 |
atagaaggaagatgatgaatttgaaaagatgaatgactttgttaaaggattgtgttgttgtt |
37182980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 341 - 386
Target Start/End: Complemental strand, 42097534 - 42097489
Alignment:
| Q |
341 |
aaaagaattataaaattccaactcagcgtgccaactatgcattttt |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
42097534 |
aaaagaattataaaattccaactcagcgtgccaaatatgcaatttt |
42097489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 130
Target Start/End: Complemental strand, 52095040 - 52094984
Alignment:
| Q |
74 |
atagaaggaagatgatgaatttggaaaggtgagtgactttgttaaaggattgtgttg |
130 |
Q |
| |
|
||||| |||||||||||||||||||||| | | ||| |||||||||| | ||||||| |
|
|
| T |
52095040 |
atagagggaagatgatgaatttggaaagataaatgagtttgttaaagaaatgtgttg |
52094984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 341 - 396
Target Start/End: Original strand, 15227273 - 15227328
Alignment:
| Q |
341 |
aaaagaattataaaattccaactcagcgtgccaactatgcatttttacccgatcag |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| ||||| ||| |||| |
|
|
| T |
15227273 |
aaaagaattataaaattccaactcagcgtgccaagtatgcaattttaaccggtcag |
15227328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 135
Target Start/End: Original strand, 23505898 - 23505959
Alignment:
| Q |
74 |
atagaaggaagatgatgaatttggaaaggtgagtgactttgttaaaggattgtgttgttgtt |
135 |
Q |
| |
|
||||| |||||||||||||||||| ||| ||| ||| |||| ||||| ||||| |||||||| |
|
|
| T |
23505898 |
atagagggaagatgatgaatttgggaagatgaatgagtttgctaaagaattgtcttgttgtt |
23505959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University