View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3780_high_8 (Length: 257)
Name: NF3780_high_8
Description: NF3780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3780_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 45280949 - 45280712
Alignment:
| Q |
1 |
agatctcgcattacgtagtgattgaatttgaaacatcaccattttttcaatagtttttaaccatatatattgctttaaatttaaggcaagttatacaact |
100 |
Q |
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| T |
45280949 |
agatctcgcattacgtagtgattgaatttgaaacatcaccattttttcaatagtttttaaccatatat--tgctttaaatttaaggcaagttatacaact |
45280852 |
T |
|
| Q |
101 |
aaccataagtacatcacattaaatcattaaaggttacctaacaatcgccctagatccaaaagatgtagtataccacacaccatttgtggagattggtctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
45280851 |
aaccataagtacatcacattaaatcattaaaggttacctaacaatcgccctagatccaaaagatgtagtataccacacaccatttgtggaaattggtctg |
45280752 |
T |
|
| Q |
201 |
tatatgccattttttcatcatgatgaataagtgttctgtt |
240 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
45280751 |
tatatgccattttttcatcatgatgaataagtgttctgtt |
45280712 |
T |
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