View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3780_low_1 (Length: 431)
Name: NF3780_low_1
Description: NF3780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3780_low_1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Complemental strand, 45281388 - 45280966
Alignment:
| Q |
1 |
caaggtcctctctctcatcggatcccagtccaatgttgtcccatcctaatccactcataggtgtctaaggaggtagttgtctcggctagagttttggata |
100 |
Q |
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| T |
45281388 |
caaggtcctctctctcatcggatccaagtccaatgttgtcccatcctaatccactcataggtgtctaaggaggtaattatctcggctagagttttggata |
45281289 |
T |
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| Q |
101 |
gtaaaaccctaatctcactctacgaaaggctaactcatggcatccatacacacttttctaacttaaaaacgtcatattttgcacattcttacttaacagg |
200 |
Q |
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| T |
45281288 |
gtaaaaccctaatctcactctacgaa-ggctaactcatggcatccatacacacttttctaacttaaaaacgtcatattttgcacattcttacttaacagg |
45281190 |
T |
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| Q |
201 |
tccatcatcatgtaatcagaggagttgttcaacgctcaccaccttcatcccataacaaccactcaggccagggatattaggtcgtattaacatgtgttgg |
300 |
Q |
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| T |
45281189 |
tacatcatcatgtaatcagaggagttgttcaacgctcaccaccttcatcccataacaaccactcaggccagggatattaggtcgtattaacatgtgttgg |
45281090 |
T |
|
| Q |
301 |
gccggtataaattttataaatttgattttattggttggccatagttagttcgatttaatttaatttacaacacaaagctagctagctatagctagtgtgg |
400 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45281089 |
gccggta-------tataaatttgattttattggttggccatagttagttcgatttaatttaatttacaacacaaagctagctagctatagctagtgtgg |
45280997 |
T |
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| Q |
401 |
tcttgttgtttgagtgtcatgcgtcataaca |
431 |
Q |
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| T |
45280996 |
tcttgttgtttgagtgtcatgtgtcataaca |
45280966 |
T |
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