View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3780_low_4 (Length: 349)

Name: NF3780_low_4
Description: NF3780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3780_low_4
NF3780_low_4
[»] chr1 (29 HSPs)
chr1 (227-310)||(18517858-18517942)
chr1 (227-310)||(27857981-27858065)
chr1 (230-310)||(9345974-9346055)
chr1 (227-305)||(24218570-24218648)
chr1 (227-310)||(2820070-2820153)
chr1 (253-310)||(12625373-12625430)
chr1 (241-311)||(21684774-21684844)
chr1 (227-310)||(22601378-22601462)
chr1 (253-305)||(10756633-10756685)
chr1 (227-310)||(16233919-16234002)
chr1 (246-310)||(23861261-23861325)
chr1 (227-303)||(31358538-31358616)
chr1 (251-305)||(25398674-25398727)
chr1 (253-310)||(7308986-7309043)
chr1 (253-310)||(22153021-22153078)
chr1 (251-304)||(23549529-23549582)
chr1 (253-310)||(32786765-32786822)
chr1 (253-310)||(48571078-48571135)
chr1 (259-311)||(17025833-17025885)
chr1 (258-310)||(30892260-30892312)
chr1 (246-305)||(10890448-10890502)
chr1 (253-300)||(46088198-46088245)
chr1 (270-312)||(22018511-22018553)
chr1 (253-311)||(29214994-29215052)
chr1 (253-310)||(1577044-1577101)
chr1 (253-310)||(10250194-10250246)
chr1 (257-310)||(23053577-23053629)
chr1 (253-311)||(20959857-20959912)
chr1 (262-310)||(23975674-23975722)
[»] chr5 (16 HSPs)
chr5 (227-311)||(39799671-39799754)
chr5 (227-310)||(31589853-31589936)
chr5 (227-311)||(26120677-26120761)
chr5 (228-305)||(27276577-27276654)
chr5 (227-310)||(20967209-20967296)
chr5 (253-310)||(9399498-9399556)
chr5 (230-311)||(15439492-15439574)
chr5 (253-310)||(21076068-21076125)
chr5 (253-314)||(21100635-21100696)
chr5 (253-314)||(31487399-31487460)
chr5 (253-312)||(21199896-21199955)
chr5 (253-315)||(35932891-35932954)
chr5 (253-311)||(90319-90376)
chr5 (253-310)||(6513315-6513373)
chr5 (253-310)||(3246346-3246403)
chr5 (253-310)||(22000912-22000969)
[»] chr4 (26 HSPs)
chr4 (227-310)||(18773282-18773366)
chr4 (246-310)||(17527230-17527294)
chr4 (253-312)||(40859898-40859957)
chr4 (253-311)||(19611231-19611289)
chr4 (253-314)||(22676419-22676479)
chr4 (227-310)||(13890030-13890114)
chr4 (246-304)||(18393805-18393864)
chr4 (253-310)||(17399538-17399596)
chr4 (250-311)||(19889835-19889896)
chr4 (254-310)||(9752407-9752464)
chr4 (229-310)||(13692993-13693074)
chr4 (250-310)||(16325350-16325411)
chr4 (253-305)||(56033725-56033778)
chr4 (253-305)||(15134917-15134969)
chr4 (253-304)||(6640891-6640942)
chr4 (253-312)||(12599946-12600005)
chr4 (251-310)||(24618887-24618946)
chr4 (253-312)||(37986472-37986534)
chr4 (253-310)||(16631631-16631689)
chr4 (257-310)||(17057972-17058026)
chr4 (250-311)||(18473262-18473324)
chr4 (251-301)||(32469308-32469357)
chr4 (253-310)||(10072079-10072140)
chr4 (246-310)||(14903259-14903322)
chr4 (261-305)||(15736019-15736063)
chr4 (253-305)||(54679059-54679111)
[»] chr3 (36 HSPs)
chr3 (227-305)||(27849431-27849509)
chr3 (230-310)||(13698556-13698635)
chr3 (246-314)||(932043-932112)
chr3 (246-309)||(8693084-8693146)
chr3 (246-309)||(9044953-9045015)
chr3 (253-315)||(23539128-23539190)
chr3 (253-311)||(28581291-28581349)
chr3 (253-310)||(40850174-40850232)
chr3 (227-280)||(3087442-3087495)
chr3 (253-310)||(12963989-12964046)
chr3 (253-311)||(8875028-8875087)
chr3 (253-312)||(14954605-14954664)
chr3 (253-312)||(53057628-53057687)
chr3 (253-311)||(12727139-12727197)
chr3 (253-310)||(1241978-1242035)
chr3 (246-310)||(12410610-12410674)
chr3 (250-311)||(13410962-13411022)
chr3 (227-280)||(13931225-13931278)
chr3 (253-310)||(15902393-15902449)
chr3 (253-310)||(49554413-49554470)
chr3 (253-310)||(52919622-52919678)
chr3 (253-305)||(21639184-21639236)
chr3 (253-312)||(11189189-11189247)
chr3 (253-312)||(17239832-17239891)
chr3 (253-312)||(19889842-19889901)
chr3 (253-312)||(31302545-31302603)
chr3 (260-310)||(3237891-3237941)
chr3 (253-310)||(17667566-17667624)
chr3 (257-311)||(22770761-22770815)
chr3 (253-310)||(29854607-29854665)
chr3 (253-311)||(46797297-46797355)
chr3 (261-314)||(6089921-6089974)
chr3 (246-314)||(15646986-15647054)
chr3 (268-312)||(16305961-16306004)
chr3 (253-312)||(21640033-21640093)
chr3 (270-313)||(51340168-51340212)
[»] scaffold0037 (1 HSPs)
scaffold0037 (250-311)||(87091-87152)
[»] chr8 (19 HSPs)
chr8 (227-303)||(23192680-23192757)
chr8 (230-305)||(19490987-19491061)
chr8 (246-311)||(33052186-33052250)
chr8 (253-312)||(17541393-17541452)
chr8 (253-311)||(1210604-1210662)
chr8 (253-310)||(13431522-13431579)
chr8 (253-305)||(6406956-6407008)
chr8 (253-312)||(17007498-17007557)
chr8 (253-312)||(17287067-17287126)
chr8 (253-312)||(40846308-40846367)
chr8 (258-312)||(18676845-18676899)
chr8 (259-311)||(43773307-43773359)
chr8 (246-300)||(24667635-24667689)
chr8 (250-300)||(25850885-25850935)
chr8 (253-310)||(30422334-30422391)
chr8 (227-280)||(17928315-17928367)
chr8 (253-310)||(25163261-25163318)
chr8 (253-310)||(45539388-45539445)
chr8 (254-310)||(27739070-27739125)
[»] chr2 (33 HSPs)
chr2 (250-311)||(22797603-22797664)
chr2 (227-314)||(24450273-24450360)
chr2 (253-312)||(40780502-40780561)
chr2 (246-310)||(14794624-14794689)
chr2 (241-312)||(7687278-7687348)
chr2 (253-311)||(31328821-31328879)
chr2 (253-311)||(31335542-31335600)
chr2 (250-311)||(22790082-22790143)
chr2 (253-310)||(28551768-28551825)
chr2 (255-310)||(6391861-6391916)
chr2 (251-305)||(16735815-16735869)
chr2 (253-312)||(22782479-22782538)
chr2 (253-311)||(27294684-27294743)
chr2 (253-310)||(19539647-19539704)
chr2 (253-310)||(24851520-24851577)
chr2 (246-302)||(25917916-25917973)
chr2 (230-305)||(19321189-19321265)
chr2 (253-312)||(24575224-24575284)
chr2 (253-304)||(16494547-16494598)
chr2 (229-280)||(21911635-21911686)
chr2 (253-312)||(28702072-28702131)
chr2 (253-300)||(38780602-38780648)
chr2 (253-310)||(22188955-22189013)
chr2 (253-310)||(22455807-22455865)
chr2 (252-311)||(22786502-22786563)
chr2 (251-305)||(40203188-40203241)
chr2 (251-280)||(14866584-14866613)
chr2 (249-310)||(22682642-22682703)
chr2 (253-310)||(41122526-41122583)
chr2 (253-310)||(45087845-45087902)
chr2 (253-305)||(20569597-20569649)
chr2 (253-312)||(22257381-22257441)
chr2 (253-305)||(25828354-25828406)
[»] scaffold0275 (1 HSPs)
scaffold0275 (253-311)||(23823-23881)
[»] chr6 (29 HSPs)
chr6 (253-311)||(32543457-32543515)
chr6 (250-310)||(15551235-15551295)
chr6 (250-314)||(26184982-26185046)
chr6 (253-310)||(14101341-14101398)
chr6 (227-310)||(24471236-24471318)
chr6 (257-305)||(32335033-32335081)
chr6 (227-278)||(14883811-14883862)
chr6 (253-310)||(10631331-10631389)
chr6 (250-311)||(15395553-15395615)
chr6 (253-310)||(15532527-15532585)
chr6 (254-311)||(19687927-19687985)
chr6 (253-310)||(15301413-15301470)
chr6 (257-310)||(17446540-17446593)
chr6 (227-312)||(19875065-19875150)
chr6 (246-311)||(24398047-24398112)
chr6 (227-266)||(18027548-18027587)
chr6 (259-310)||(26588794-26588845)
chr6 (253-304)||(26941607-26941658)
chr6 (253-310)||(17380757-17380815)
chr6 (253-310)||(21624286-21624344)
chr6 (259-305)||(30372577-30372623)
chr6 (247-280)||(14924127-14924160)
chr6 (253-305)||(16528514-16528567)
chr6 (253-310)||(22801339-22801395)
chr6 (251-311)||(25777491-25777551)
chr6 (258-310)||(3680299-3680351)
chr6 (270-314)||(7752041-7752085)
chr6 (258-305)||(29537820-29537868)
chr6 (246-282)||(31128121-31128157)
[»] scaffold0488 (1 HSPs)
scaffold0488 (253-304)||(11402-11453)
[»] chr7 (25 HSPs)
chr7 (254-305)||(23125161-23125212)
chr7 (251-310)||(12223312-12223372)
chr7 (246-300)||(16464228-16464283)
chr7 (253-310)||(4493739-4493796)
chr7 (253-305)||(16315443-16315496)
chr7 (259-311)||(10884082-10884134)
chr7 (254-305)||(9802284-9802334)
chr7 (255-310)||(16557518-16557573)
chr7 (255-310)||(16608089-16608144)
chr7 (233-311)||(16812234-16812312)
chr7 (258-311)||(330845-330899)
chr7 (253-310)||(1292247-1292305)
chr7 (246-280)||(11573010-11573044)
chr7 (253-310)||(13138831-13138889)
chr7 (253-310)||(32265615-32265673)
chr7 (253-311)||(33604098-33604156)
chr7 (246-303)||(4549561-4549617)
chr7 (254-311)||(11030279-11030336)
chr7 (253-310)||(11792065-11792122)
chr7 (250-310)||(19416433-19416494)
chr7 (253-313)||(30025125-30025186)
chr7 (253-310)||(48063716-48063772)
chr7 (251-302)||(9064806-9064858)
chr7 (253-312)||(14186878-14186938)
chr7 (253-300)||(23280882-23280930)
[»] scaffold0011 (2 HSPs)
scaffold0011 (246-310)||(250845-250909)
scaffold0011 (253-311)||(145304-145364)
[»] scaffold0056 (1 HSPs)
scaffold0056 (253-312)||(26506-26566)
[»] scaffold0758 (1 HSPs)
scaffold0758 (246-312)||(3511-3575)
[»] scaffold0022 (2 HSPs)
scaffold0022 (253-312)||(36624-36683)
scaffold0022 (253-312)||(134684-134743)
[»] scaffold0074 (1 HSPs)
scaffold0074 (230-311)||(30970-31052)
[»] scaffold0007 (1 HSPs)
scaffold0007 (255-305)||(63537-63587)
[»] scaffold0249 (1 HSPs)
scaffold0249 (253-310)||(18615-18672)
[»] scaffold0084 (2 HSPs)
scaffold0084 (253-310)||(31786-31843)
scaffold0084 (253-312)||(48510-48570)
[»] scaffold0045 (1 HSPs)
scaffold0045 (253-310)||(88456-88513)
[»] scaffold0009 (1 HSPs)
scaffold0009 (253-310)||(83494-83550)
[»] scaffold0498 (1 HSPs)
scaffold0498 (227-310)||(4083-4166)
[»] scaffold0364 (1 HSPs)
scaffold0364 (258-305)||(5375-5422)
[»] scaffold0146 (1 HSPs)
scaffold0146 (253-312)||(14309-14368)
[»] scaffold0004 (1 HSPs)
scaffold0004 (253-311)||(378408-378467)
[»] scaffold0035 (2 HSPs)
scaffold0035 (253-312)||(110448-110511)
scaffold0035 (253-305)||(20322-20373)
[»] scaffold0471 (1 HSPs)
scaffold0471 (253-310)||(2651-2708)
[»] scaffold0205 (1 HSPs)
scaffold0205 (257-310)||(813-866)
[»] scaffold0081 (1 HSPs)
scaffold0081 (253-310)||(13191-13248)
[»] scaffold0439 (1 HSPs)
scaffold0439 (253-312)||(7565-7625)
[»] scaffold0352 (1 HSPs)
scaffold0352 (259-310)||(1683-1735)
[»] scaffold0315 (1 HSPs)
scaffold0315 (253-312)||(7864-7923)
[»] scaffold0290 (1 HSPs)
scaffold0290 (253-312)||(19511-19571)
[»] scaffold0092 (1 HSPs)
scaffold0092 (262-313)||(7482-7534)
[»] scaffold0014 (1 HSPs)
scaffold0014 (270-310)||(112797-112837)


Alignment Details
Target: chr1 (Bit Score: 57; Significance: 9e-24; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 227 - 310
Target Start/End: Original strand, 18517858 - 18517942
Alignment:
Q  227 cagactctgaacattgaagttagtttaaaaagaagaaaaaactaacacaattc-acccctctttcttgtgtttttctcacattca 310  Q
    |||||||||||||||| | |||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||| ||||    
T  18517858 cagactctgaacattggacttagtttaaaaagaagcaaaaactaacacaattcaacccccctttcttgtgtttttctcaccttca 18517942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 227 - 310
Target Start/End: Complemental strand, 27858065 - 27857981
Alignment:
Q  227 cagactctgaacattgaagttagttt-aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    |||||||||||||||| | ||||||| |||||||||||||| ||||||||||||| ||||| |||||||||||||||||| ||||    
T  27858065 cagactctgaacattggacttagttttaaaaagaagaaaaagctaacacaattcaaccctccttcttgtgtttttctcaccttca 27857981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 230 - 310
Target Start/End: Complemental strand, 9346055 - 9345974
Alignment:
Q  230 actctgaacattgaagttagttt-aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    ||||||||||||| | ||| ||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||    
T  9346055 actctgaacattggacttacttttaaaaagaagaaaaaactaacacaattcaaccctccttcttgtgtttttctcaccttca 9345974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 227 - 305
Target Start/End: Complemental strand, 24218648 - 24218570
Alignment:
Q  227 cagactctgaacattgaagttagtttaaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcac 305  Q
    |||||| || || ||||| ||||||||||||||||||||||||||||||||||| | | | ||||||||||||||||||    
T  24218648 cagactttggactttgaacttagtttaaaaagaagaaaaaactaacacaattcaacaccccttcttgtgtttttctcac 24218570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 227 - 310
Target Start/End: Original strand, 2820070 - 2820153
Alignment:
Q  227 cagactctgaacattgaagttagtttaaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    |||||| |||||  |||| ||||||||||||||||||||||||||||||||||| ||  | ||||| |||||||||||| ||||    
T  2820070 cagactttgaactctgaacttagtttaaaaagaagaaaaaactaacacaattcaacctcccttcttatgtttttctcaccttca 2820153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 12625373 - 12625430
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||| ||||    
T  12625373 aaaacgaagaaaaaactaacacaattcaaccctccttcttgtgtttttctcaccttca 12625430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 241 - 311
Target Start/End: Original strand, 21684774 - 21684844
Alignment:
Q  241 tgaagttagtttaaaaagaagaaaaaactaacacaatt-cacccctctttcttgtgtttttctcacattcaa 311  Q
    |||| ||||||||||||||||||||| |||||||||||  ||||||| || |||||||||||||||||||||    
T  21684774 tgaacttagtttaaaaagaagaaaaatctaacacaattaaacccctc-ttattgtgtttttctcacattcaa 21684844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 227 - 310
Target Start/End: Original strand, 22601378 - 22601462
Alignment:
Q  227 cagactctgaacattgaagttagtttaaaaagaagaaaaaactaacacaattca--cccctctttcttgtgtttttctcacattca 310  Q
    ||||||||||||| || | ||| ||| ||||||||||||| |||||||||||||  ||||||||| ||||||||||||||| ||||    
T  22601378 cagactctgaacactggacttaattttaaaagaagaaaaagctaacacaattcaaccccctcttt-ttgtgtttttctcaccttca 22601462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 253 - 305
Target Start/End: Complemental strand, 10756685 - 10756633
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcac 305  Q
    |||| ||||||||||||||||||||||| ||||  ||||||||||||||||||    
T  10756685 aaaacgaagaaaaaactaacacaattcaaccctgattcttgtgtttttctcac 10756633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 227 - 310
Target Start/End: Original strand, 16233919 - 16234002
Alignment:
Q  227 cagactctgaacattgaagttagttt-aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    ||||||||||||| || | ||||||| |||||||||||||| |||||||||||||  |||| ||||| |||||||||||| ||||    
T  16233919 cagactctgaacactggacttagttttaaaaagaagaaaaagctaacacaattca-acctccttcttatgtttttctcaccttca 16234002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 246 - 310
Target Start/End: Original strand, 23861261 - 23861325
Alignment:
Q  246 ttagtttaaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    ||||||||||||| ||||||| ||||||||||||| ||  | |||||||||||||||||| ||||    
T  23861261 ttagtttaaaaagtagaaaaagctaacacaattcaacctccgttcttgtgtttttctcaccttca 23861325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 303
Target Start/End: Complemental strand, 31358616 - 31358538
Alignment:
Q  227 cagactctgaacattgaagttagtttaaaaagaagaaaaaactaacacaattca--cccctctttcttgtgtttttctc 303  Q
    ||||||||| ||  |||| |||||||||||||||||||||  ||||||||||||    |||||||||||||||||||||    
T  31358616 cagactctggactctgaacttagtttaaaaagaagaaaaagttaacacaattcaatatcctctttcttgtgtttttctc 31358538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 305
Target Start/End: Complemental strand, 25398727 - 25398674
Alignment:
Q  251 ttaaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcac 305  Q
    ||||||||||||||||| |||||||||||| ||| | ||||||||||||||||||    
T  25398727 ttaaaaagaagaaaaaattaacacaattcaaccc-ccttcttgtgtttttctcac 25398674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 7309043 - 7308986
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    |||| ||||||||||| ||||||||||| ||| | |||||||||||||||||| ||||    
T  7309043 aaaacgaagaaaaaaccaacacaattcaaccccccttcttgtgtttttctcaccttca 7308986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 22153078 - 22153021
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    |||||||||||||| | ||||||||||| ||| | |||||||||||||||||| ||||    
T  22153078 aaaaagaagaaaaagccaacacaattcaaccccccttcttgtgtttttctcaccttca 22153021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 304
Target Start/End: Complemental strand, 23549582 - 23549529
Alignment:
Q  251 ttaaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctca 304  Q
    |||||||||||||||||||||||||||||| |   ||||||||| |||||||||    
T  23549582 ttaaaaagaagaaaaaactaacacaattcaacttcctttcttgtctttttctca 23549529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 32786765 - 32786822
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    |||||||| ||||| ||||||||||||| ||| | |||||||||||||||||| ||||    
T  32786765 aaaaagaaaaaaaatctaacacaattcaaccccccttcttgtgtttttctcaccttca 32786822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 48571078 - 48571135
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    |||||||||||||||  ||||||||||| ||| | |||||||||||||||||| ||||    
T  48571078 aaaaagaagaaaaaatcaacacaattcaacccccattcttgtgtttttctcaccttca 48571135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 311
Target Start/End: Original strand, 17025833 - 17025885
Alignment:
Q  259 aagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaa 311  Q
    |||||||| ||||||||||||| ||| | |||||||||||||||||| |||||    
T  17025833 aagaaaaatctaacacaattcaaccccccttcttgtgtttttctcactttcaa 17025885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 310
Target Start/End: Complemental strand, 30892312 - 30892260
Alignment:
Q  258 gaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    ||||||||| ||||||||||||| ||| | |||||||||||||||||| ||||    
T  30892312 gaagaaaaagctaacacaattcaaccccccttcttgtgtttttctcaccttca 30892260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 10890448 - 10890502
Alignment:
Q  246 ttagtttaaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcac 305  Q
    |||||||||||||||||||||||||||| |||||| |||     ||||||||||||||||    
T  10890448 ttagtttaaaaagaagaaaaaactaacataattcaaccc-----cttgtgtttttctcac 10890502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 300
Target Start/End: Complemental strand, 46088245 - 46088198
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgttttt 300  Q
    |||||| ||||||| ||||||||||||| ||||| |||||||||||||    
T  46088245 aaaaaggagaaaaacctaacacaattcaaccctccttcttgtgttttt 46088198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 312
Target Start/End: Complemental strand, 22018553 - 22018511
Alignment:
Q  270 aacacaattcacccctctttcttgtgtttttctcacattcaat 312  Q
    ||||||||||||||| | |||||||||||||||||| ||||||    
T  22018553 aacacaattcacccccccttcttgtgtttttctcaccttcaat 22018511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 29215052 - 29214994
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaa 311  Q
    ||||||||||||||||||| |||||||| | | | ||||| |||||||||||| |||||    
T  29215052 aaaaagaagaaaaaactaatacaattcaacaccccttcttatgtttttctcaccttcaa 29214994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 1577101 - 1577044
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    |||||||||||||||| ||||||||||| ||| | ||| | |||||||||||| ||||    
T  1577101 aaaaagaagaaaaaaccaacacaattcaaccccccttcgtatgtttttctcaccttca 1577044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 10250246 - 10250194
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    |||||||||||||||| |||||||||||||||     |||||||||||||||| ||||    
T  10250246 aaaaagaagaaaaaaccaacacaattcacccc-----cttgtgtttttctcaccttca 10250194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 310
Target Start/End: Complemental strand, 23053629 - 23053577
Alignment:
Q  257 agaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    ||||||||||||||| |||||||| ||| | |||||||||||||||||| ||||    
T  23053629 agaagaaaaaactaaaacaattcaaccc-ccttcttgtgtttttctcaccttca 23053577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 20959857 - 20959912
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaa 311  Q
    |||| ||||||||||||||||||||||| ||| |   |||||||||||||||| |||||    
T  20959857 aaaacgaagaaaaaactaacacaattcaaccccc---cttgtgtttttctcaccttcaa 20959912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 310
Target Start/End: Original strand, 23975674 - 23975722
Alignment:
Q  262 aaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    ||||| ||||||||||||| ||| | |||||||||||||||||| ||||    
T  23975674 aaaaagctaacacaattcaaccccccttcttgtgtttttctcaccttca 23975722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 227 - 311
Target Start/End: Original strand, 39799671 - 39799754
Alignment:
Q  227 cagactctgaacattgaagttagtttaaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaa 311  Q
    ||||||||||| |||| | ||||||||||||||||||||||||||||||||||| | | | |||||||||||||||||| |||||    
T  39799671 cagactctgaatattggacttagtttaaaaagaagaaaaaactaacacaattcaactc-ccttcttgtgtttttctcaccttcaa 39799754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 227 - 310
Target Start/End: Original strand, 31589853 - 31589936
Alignment:
Q  227 cagactctgaacattgaagttagtttaaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    |||||||||||||||| | | ||||||||||||||||||| ||||||||||||| ||| | || ||||||||||||||| ||||    
T  31589853 cagactctgaacattgtactcagtttaaaaagaagaaaaagctaacacaattcaaccccccttattgtgtttttctcaccttca 31589936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 227 - 311
Target Start/End: Original strand, 26120677 - 26120761
Alignment:
Q  227 cagactctgaacattgaagttagttt-aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaa 311  Q
    |||||||||||| ||| ||||||||| |||||||||||||| ||||||||||||| ||| | |||||||||||||||||| |||||    
T  26120677 cagactctgaacgttggagttagttttaaaaagaagaaaaagctaacacaattcaaccc-ccttcttgtgtttttctcaccttcaa 26120761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 228 - 305
Target Start/End: Original strand, 27276577 - 27276654
Alignment:
Q  228 agactctgaacattgaagttagtttaaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcac 305  Q
    |||||||| || ||||| || |||||||||||||||||| ||||||||||||| ||| | ||||||||||||||||||    
T  27276577 agactctggactttgaactttgtttaaaaagaagaaaaatctaacacaattcaaccccccttcttgtgtttttctcac 27276654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 227 - 310
Target Start/End: Complemental strand, 20967296 - 20967209
Alignment:
Q  227 cagactctgaacattgaagttagtttaaaaagaagaaaaaactaacacaattca---cccct-ctttcttgtgtttttctcacattca 310  Q
    |||||||||||||||| | ||||||||||||||||||||| |||||| ||||||   ||||| | |||||||||||||||||| ||||    
T  20967296 cagactctgaacattggacttagtttaaaaagaagaaaaagctaacataattcaacccccctcccttcttgtgtttttctcaccttca 20967209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 9399498 - 9399556
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccct-ctttcttgtgtttttctcacattca 310  Q
    |||| ||||||||||||||||||||||| |||| |||||||||||||||||||| ||||    
T  9399498 aaaatgaagaaaaaactaacacaattcaaccctcctttcttgtgtttttctcaccttca 9399556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 230 - 311
Target Start/End: Complemental strand, 15439574 - 15439492
Alignment:
Q  230 actctgaacattgaagttagtttaaaaagaagaaaaaactaacacaattc-acccctctttcttgtgtttttctcacattcaa 311  Q
    ||||||||||||| | ||| |||||||||||||||||   |||||||||| |||||  ||||||||||||||||||| |||||    
T  15439574 actctgaacattggacttaatttaaaaagaagaaaaagaaaacacaattcaacccccatttcttgtgtttttctcaccttcaa 15439492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 21076068 - 21076125
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    |||| ||||||||| |||||| |||||| ||||| |||||||||||||||||||||||    
T  21076068 aaaacgaagaaaaagctaacataattcaaccctccttcttgtgtttttctcacattca 21076125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 314
Target Start/End: Original strand, 21100635 - 21100696
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaatat 314  Q
    |||| ||||||||||||||||||||||| ||| | |||||||| ||||||||| ||||||||    
T  21100635 aaaatgaagaaaaaactaacacaattcaaccccccttcttgtgcttttctcaccttcaatat 21100696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 314
Target Start/End: Complemental strand, 31487460 - 31487399
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaatat 314  Q
    |||| ||||||||||| ||||||||||| ||| | |||||||||||||||||| ||||||||    
T  31487460 aaaacgaagaaaaaaccaacacaattcaaccccccttcttgtgtttttctcaccttcaatat 31487399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 312
Target Start/End: Original strand, 21199896 - 21199955
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaat 312  Q
    |||| ||||||||| ||||||||||||| ||| | |||||||||||||||||| ||||||    
T  21199896 aaaacgaagaaaaagctaacacaattcaaccccccttcttgtgtttttctcaccttcaat 21199955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 315
Target Start/End: Original strand, 35932891 - 35932954
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattc-acccctctttcttgtgtttttctcacattcaatatt 315  Q
    |||||||||||||| |||||||||||| ||| | | |||||||||||||||||| |||| ||||    
T  35932891 aaaaagaagaaaaagctaacacaattcaacctccccttcttgtgtttttctcaccttcagtatt 35932954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 90319 - 90376
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaa 311  Q
    |||| ||||||||| ||||||||||||| || || |||||||||||||||||| |||||    
T  90319 aaaacgaagaaaaagctaacacaattcaacc-tcattcttgtgtttttctcaccttcaa 90376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 6513315 - 6513373
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattca-cccctctttcttgtgtttttctcacattca 310  Q
    |||| ||||||||| | ||||||||||| |||||| |||||||||||||||||| ||||    
T  6513315 aaaacgaagaaaaagccaacacaattcaacccctccttcttgtgtttttctcaccttca 6513373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 3246346 - 3246403
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    ||||||||||||||   ||||||||||| ||| | |||||||||||||||||| ||||    
T  3246346 aaaaagaagaaaaagaaaacacaattcaaccccccttcttgtgtttttctcaccttca 3246403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 22000912 - 22000969
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    |||| ||||||||| ||||||||| ||| ||| | |||||||||||||||||| ||||    
T  22000912 aaaacgaagaaaaagctaacacaactcaaccccccttcttgtgtttttctcaccttca 22000969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 227 - 310
Target Start/End: Complemental strand, 18773366 - 18773282
Alignment:
Q  227 cagactctgaacattgaagttagttt-aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    |||||||||||||||  | ||||||| |||||||||||||||||||||| ||||| ||| |||||||||||||||||||| ||||    
T  18773366 cagactctgaacattatacttagttttaaaaagaagaaaaaactaacacgattcaaccccctttcttgtgtttttctcaccttca 18773282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 246 - 310
Target Start/End: Original strand, 17527230 - 17527294
Alignment:
Q  246 ttagtttaaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    ||||||||||||||||||||| ||||||||||||| ||| | ||||| |||||||||||| ||||    
T  17527230 ttagtttaaaaagaagaaaaagctaacacaattcaacccgccttcttttgtttttctcaccttca 17527294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 253 - 312
Target Start/End: Complemental strand, 40859957 - 40859898
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaat 312  Q
    |||||||||||||| ||||||||||||| ||| | |||||||||||||||||| ||||||    
T  40859957 aaaaagaagaaaaagctaacacaattcaaccccccttcttgtgtttttctcaccttcaat 40859898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 19611231 - 19611289
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaa 311  Q
    |||| ||||||||||||||||||||||| ||| | |||||||||||||||||| |||||    
T  19611231 aaaacgaagaaaaaactaacacaattcaaccccccttcttgtgtttttctcaccttcaa 19611289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 314
Target Start/End: Original strand, 22676419 - 22676479
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaatat 314  Q
    |||||||||||||| | ||||||||||||||| | |||||||||||||||||| ||||||||    
T  22676419 aaaaagaagaaaaagccaacacaattcacccc-ccttcttgtgtttttctcaccttcaatat 22676479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 227 - 310
Target Start/End: Complemental strand, 13890114 - 13890030
Alignment:
Q  227 cagactctgaacattgaagttagttt-aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    ||||||||||||| || | ||||||| |||||||||||||| ||||||||||||| ||| | ||||| | |||||||||| ||||    
T  13890114 cagactctgaacactggacttagttttaaaaagaagaaaaatctaacacaattcaaccccccttcttttatttttctcaccttca 13890030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 304
Target Start/End: Complemental strand, 18393864 - 18393805
Alignment:
Q  246 ttagtttaaaaagaagaaaaaactaacacaattcaccc-ctctttcttgtgtttttctca 304  Q
    |||||||||||||||||||||||||||||||||||  | | | |||||||||||||||||    
T  18393864 ttagtttaaaaagaagaaaaaactaacacaattcaatctccccttcttgtgtttttctca 18393805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 17399538 - 17399596
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattc-acccctctttcttgtgtttttctcacattca 310  Q
    |||||||||||||| |||||||||||| ||||| | |||||||||||||||||| ||||    
T  17399538 aaaaagaagaaaaacctaacacaattcaacccccccttcttgtgtttttctcaccttca 17399596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 311
Target Start/End: Original strand, 19889835 - 19889896
Alignment:
Q  250 tttaaaaagaagaaaaaactaacacaattc-acccctctttcttgtgtttttctcacattcaa 311  Q
    |||||||||||||||| ||||||||||||| |||||| |||| |||||||||||||| |||||    
T  19889835 tttaaaaagaagaaaagactaacacaattcaacccctttttc-tgtgtttttctcaccttcaa 19889896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 310
Target Start/End: Original strand, 9752407 - 9752464
Alignment:
Q  254 aaaagaagaaaaaactaacacaattc-acccctctttcttgtgtttttctcacattca 310  Q
    ||||||||||||| |||||||||||| ||||| | |||||||||||||||||| ||||    
T  9752407 aaaagaagaaaaagctaacacaattcaaccccccattcttgtgtttttctcaccttca 9752464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 229 - 310
Target Start/End: Complemental strand, 13693074 - 13692993
Alignment:
Q  229 gactctgaacattgaagttagtttaaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    |||| ||||| ||| | |||||||||||| |||||||| |||||||||||   ||| | |||||||||||||||||| ||||    
T  13693074 gactttgaactttggacttagtttaaaaataagaaaaatctaacacaatttgaccccccttcttgtgtttttctcaccttca 13692993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 310
Target Start/End: Original strand, 16325350 - 16325411
Alignment:
Q  250 tttaaaaagaagaaaaaactaacacaa-ttcacccctctttcttgtgtttttctcacattca 310  Q
    ||||||||||||||||||||||||||| || ||||| | ||||||||||| |||||| ||||    
T  16325350 tttaaaaagaagaaaaaactaacacaatttaacccccccttcttgtgtttatctcaccttca 16325411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 305
Target Start/End: Complemental strand, 56033778 - 56033725
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccct-ctttcttgtgtttttctcac 305  Q
    |||||||||||||||| ||||||||||| |||| | ||||||||||||||||||    
T  56033778 aaaaagaagaaaaaaccaacacaattcaaccctccattcttgtgtttttctcac 56033725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 305
Target Start/End: Complemental strand, 15134969 - 15134917
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcac 305  Q
    |||| ||||||| ||||||||||||||| ||| | ||||||||||||||||||    
T  15134969 aaaacgaagaaataactaacacaattcaaccccccttcttgtgtttttctcac 15134917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 304
Target Start/End: Complemental strand, 6640942 - 6640891
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctca 304  Q
    |||| ||||||||| ||||||||||||| ||| | |||||||||||||||||    
T  6640942 aaaacgaagaaaaagctaacacaattcaaccccccttcttgtgtttttctca 6640891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 312
Target Start/End: Complemental strand, 12600005 - 12599946
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaat 312  Q
    |||| ||||||||| |||||||||||||  || | ||||| |||||||||||||||||||    
T  12600005 aaaacgaagaaaaagctaacacaattcaatcccccttcttatgtttttctcacattcaat 12599946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 310
Target Start/End: Complemental strand, 24618946 - 24618887
Alignment:
Q  251 ttaaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    ||||||||||||| || ||||||||||||| ||  | |||||||||||||||||| ||||    
T  24618946 ttaaaaagaagaataagctaacacaattcaaccgcccttcttgtgtttttctcaccttca 24618887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 312
Target Start/End: Original strand, 37986472 - 37986534
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattc-acccctct--ttcttgtgtttttctcacattcaat 312  Q
    |||| |||||||||||||||||||||| ||||||||  ||||||| |||||||||| ||||||    
T  37986472 aaaacgaagaaaaaactaacacaattcaacccctctccttcttgtatttttctcactttcaat 37986534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 16631689 - 16631631
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctct-ttcttgtgtttttctcacattca 310  Q
    |||| ||||||||||| ||||||||||| ||| || |||||||||||||||||| ||||    
T  16631689 aaaaggaagaaaaaaccaacacaattcaaccccctcttcttgtgtttttctcaccttca 16631631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 310
Target Start/End: Original strand, 17057972 - 17058026
Alignment:
Q  257 agaagaaaaaactaacacaattc-acccctctttcttgtgtttttctcacattca 310  Q
    |||||||||| |||||||||||| ||||| | |||||||||||||||||| ||||    
T  17057972 agaagaaaaagctaacacaattcaacccccccttcttgtgtttttctcaccttca 17058026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 311
Target Start/End: Complemental strand, 18473324 - 18473262
Alignment:
Q  250 tttaaaaagaagaaaaaactaacacaattc-acccctctttcttgtgtttttctcacattcaa 311  Q
    ||||||||||||||||| |||||| ||||| ||||| | || ||||||||||||||| |||||    
T  18473324 tttaaaaagaagaaaaagctaacataattcaaccccccctttttgtgtttttctcaccttcaa 18473262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 301
Target Start/End: Original strand, 32469308 - 32469357
Alignment:
Q  251 ttaaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttc 301  Q
    |||||||  ||||||||||||||||||||||| ||| ||||||||||||||    
T  32469308 ttaaaaacgagaaaaaactaacacaattcacctctc-ttcttgtgtttttc 32469357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 10072140 - 10072079
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctct----ttcttgtgtttttctcacattca 310  Q
    |||||||||||||| ||||||||||||| ||| ||    |||||||||||||||||| ||||    
T  10072140 aaaaagaagaaaaagctaacacaattcaaccccctccccttcttgtgtttttctcaccttca 10072079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 310
Target Start/End: Original strand, 14903259 - 14903322
Alignment:
Q  246 ttagtttaaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    |||||||| |||||||||||| ||||||||||| | ||| | ||||||| |||||||||| ||||    
T  14903259 ttagtttagaaagaagaaaaagctaacacaattgaacccgc-ttcttgtatttttctcaccttca 14903322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 305
Target Start/End: Complemental strand, 15736063 - 15736019
Alignment:
Q  261 gaaaaaactaacacaattcacccctctttcttgtgtttttctcac 305  Q
    |||||| | ||||||||||| ||| ||||||||||||||||||||    
T  15736063 gaaaaagccaacacaattcaaccccctttcttgtgtttttctcac 15736019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 305
Target Start/End: Complemental strand, 54679111 - 54679059
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcac 305  Q
    ||||||||||||||   ||||||||||| ||| | ||||||||||||||||||    
T  54679111 aaaaagaagaaaaagaaaacacaattcaaccccccttcttgtgtttttctcac 54679059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 227 - 305
Target Start/End: Complemental strand, 27849509 - 27849431
Alignment:
Q  227 cagactctgaacattgaagttagtttaaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcac 305  Q
    |||||||||||| ||||| ||||||||||||||||||||| |||| |||||||| |||   ||||||||||||||||||    
T  27849509 cagactctgaactttgaatttagtttaaaaagaagaaaaagctaatacaattcaacccctattcttgtgtttttctcac 27849431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 230 - 310
Target Start/End: Complemental strand, 13698635 - 13698556
Alignment:
Q  230 actctgaacattgaagttagtttaaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    ||||||||||||| | ||||||||||||||||||||| ||||||||||||| ||| | ||||| |||||||||||| ||||    
T  13698635 actctgaacattggacttagtttaaaaagaagaaaaagctaacacaattcaaccc-cattcttatgtttttctcaccttca 13698556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 314
Target Start/End: Complemental strand, 932112 - 932043
Alignment:
Q  246 ttagtttaaaaagaagaaaaaactaacacaattcacccctct--ttcttgtgtttttctcacattcaatat 314  Q
    |||||||||||||||||||||  |||||||||||| ||||||  |||||||| ||||||||||||||||||    
T  932112 ttagtttaaaaagaagaaaaagttaacacaattcaaccctctccttcttgtg-ttttctcacattcaatat 932043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 309
Target Start/End: Complemental strand, 8693146 - 8693084
Alignment:
Q  246 ttagtttaaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattc 309  Q
    ||||||||||||||| ||||||||||||||||||| ||| | ||||| ||||||||||||||||    
T  8693146 ttagtttaaaaagaa-aaaaaactaacacaattcaaccccccttcttatgtttttctcacattc 8693084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 309
Target Start/End: Complemental strand, 9045015 - 9044953
Alignment:
Q  246 ttagtttaaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattc 309  Q
    ||||||||||||||| ||||||||||||||||||| ||| | ||||| ||||||||||||||||    
T  9045015 ttagtttaaaaagaa-aaaaaactaacacaattcaaccccccttcttatgtttttctcacattc 9044953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 315
Target Start/End: Original strand, 23539128 - 23539190
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaatatt 315  Q
    |||| ||||||||||||||||||||||| ||  | |||||||||||||||||| |||||||||    
T  23539128 aaaacgaagaaaaaactaacacaattcaacctcccttcttgtgtttttctcaccttcaatatt 23539190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 28581349 - 28581291
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaa 311  Q
    |||||||||||||| ||||||||||||| ||| | |||||||||||||||||| |||||    
T  28581349 aaaaagaagaaaaagctaacacaattcaacccccattcttgtgtttttctcaccttcaa 28581291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 40850232 - 40850174
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattc-acccctctttcttgtgtttttctcacattca 310  Q
    ||||||||||||||||||||||||||| ||||| | |||||||||||||||||| ||||    
T  40850232 aaaaagaagaaaaaactaacacaattcaaccccccgttcttgtgtttttctcaccttca 40850174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 280
Target Start/End: Complemental strand, 3087495 - 3087442
Alignment:
Q  227 cagactctgaacattgaagttagtttaaaaagaagaaaaaactaacacaattca 280  Q
    |||||||||||||||| | |||||||||| |||||| |||||||||||||||||    
T  3087495 cagactctgaacattggacttagtttaaatagaagataaaactaacacaattca 3087442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 12963989 - 12964046
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    |||| ||||||||| ||||||||||||| ||||| |||||||||||||||||| ||||    
T  12963989 aaaatgaagaaaaagctaacacaattcaaccctccttcttgtgtttttctcaccttca 12964046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 8875028 - 8875087
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattca-cccctctttcttgtgtttttctcacattcaa 311  Q
    |||| ||||||||||| ||||||||||| |||||| |||||||||||||||||| |||||    
T  8875028 aaaacgaagaaaaaaccaacacaattcaacccctccttcttgtgtttttctcaccttcaa 8875087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 312
Target Start/End: Complemental strand, 14954664 - 14954605
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaat 312  Q
    |||||||||||||| | ||||||||||| ||| | |||||||||||||||||| ||||||    
T  14954664 aaaaagaagaaaaagccaacacaattcaaccccccttcttgtgtttttctcaccttcaat 14954605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 312
Target Start/End: Original strand, 53057628 - 53057687
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaat 312  Q
    ||||| |||||||||  ||||||||||| ||| |||||||||||||||||||| ||||||    
T  53057628 aaaaaaaagaaaaaatcaacacaattcaaccccctttcttgtgtttttctcaccttcaat 53057687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 12727139 - 12727197
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaa 311  Q
    |||| ||| ||||| ||||||||||||| ||||| |||||||||||||||||| |||||    
T  12727139 aaaacgaaaaaaaagctaacacaattcaaccctccttcttgtgtttttctcaccttcaa 12727197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 1241978 - 1242035
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    |||||||||||||||| ||||||||||| |||   |||||||||||||||||| ||||    
T  1241978 aaaaagaagaaaaaaccaacacaattcaaccccacttcttgtgtttttctcaccttca 1242035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 310
Target Start/End: Original strand, 12410610 - 12410674
Alignment:
Q  246 ttagtttaaaaagaagaaaaaactaacacaattc-acccctctttcttgtgtttttctcacattca 310  Q
    |||||||||||||||| |||| |||||||||||| ||||| | |||||||||||||||||| ||||    
T  12410610 ttagtttaaaaagaag-aaaagctaacacaattcaaccccccattcttgtgtttttctcaccttca 12410674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 311
Target Start/End: Original strand, 13410962 - 13411022
Alignment:
Q  250 tttaaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaa 311  Q
    ||||||||||||||||| ||||||||||||| ||| | ||| ||| ||||||||||||||||    
T  13410962 tttaaaaagaagaaaaagctaacacaattcaaccccccttc-tgtatttttctcacattcaa 13411022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 227 - 280
Target Start/End: Complemental strand, 13931278 - 13931225
Alignment:
Q  227 cagactctgaacattgaagttagtttaaaaagaagaaaaaactaacacaattca 280  Q
    ||||||||| || ||||| ||||||||||||||||||||| |||||||| ||||    
T  13931278 cagactctggactttgaacttagtttaaaaagaagaaaaatctaacacagttca 13931225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 15902449 - 15902393
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    |||||||||||||| ||||||||||||| ||| | |||||||||||||||||| ||||    
T  15902449 aaaaagaagaaaaagctaacacaattcaaccc-ccttcttgtgtttttctcaccttca 15902393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 49554413 - 49554470
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    |||||||||||||||| ||||||||||| ||| | ||| |||||||||||||| ||||    
T  49554413 aaaaagaagaaaaaaccaacacaattcaaccccccttcgtgtgtttttctcaccttca 49554470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 52919678 - 52919622
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    |||| ||||||||||||||||||||||| ||| | |||||||||||||||||| ||||    
T  52919678 aaaacgaagaaaaaactaacacaattcagccc-ccttcttgtgtttttctcaccttca 52919622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 305
Target Start/End: Original strand, 21639184 - 21639236
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcac 305  Q
    |||||||||||||| | ||||||||||| ||| | ||||||||||||||||||    
T  21639184 aaaaagaagaaaaagccaacacaattcaaccccccttcttgtgtttttctcac 21639236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 312
Target Start/End: Complemental strand, 11189247 - 11189189
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaat 312  Q
    |||||||||||||||| ||||||||||| | | | |||||||||||||||||| ||||||    
T  11189247 aaaaagaagaaaaaaccaacacaattcaacac-ccttcttgtgtttttctcaccttcaat 11189189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 312
Target Start/End: Original strand, 17239832 - 17239891
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaat 312  Q
    |||| ||||||||| ||||||||||||| ||| | ||||| ||||||||||| |||||||    
T  17239832 aaaacgaagaaaaagctaacacaattcaacccccattcttatgtttttctcaaattcaat 17239891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 312
Target Start/End: Original strand, 19889842 - 19889901
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaat 312  Q
    |||| ||||||||| |||||| |||||| ||| | |||||||||||||||||| ||||||    
T  19889842 aaaacgaagaaaaagctaacaaaattcaaccccccttcttgtgtttttctcaccttcaat 19889901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 312
Target Start/End: Complemental strand, 31302603 - 31302545
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaat 312  Q
    |||||||||||||||| ||||||||||| ||| | |||||||| ||||||||| ||||||    
T  31302603 aaaaagaagaaaaaaccaacacaattcaaccccccttcttgtg-ttttctcaccttcaat 31302545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 310
Target Start/End: Complemental strand, 3237941 - 3237891
Alignment:
Q  260 agaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    ||||||| ||||||||||||| ||| | |||||||||||||||||| ||||    
T  3237941 agaaaaagctaacacaattcaaccccccttcttgtgtttttctcaccttca 3237891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 17667624 - 17667566
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattc-acccctctttcttgtgtttttctcacattca 310  Q
    |||| |||||||||||||||||||||| ||||| | ||||| |||||||||||| ||||    
T  17667624 aaaatgaagaaaaaactaacacaattcaaccccccgttcttttgtttttctcaccttca 17667566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 311
Target Start/End: Original strand, 22770761 - 22770815
Alignment:
Q  257 agaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaa 311  Q
    |||||||||| |||||||| |||| ||| | |||||||||||||||||| |||||    
T  22770761 agaagaaaaagctaacacacttcaaccccccttcttgtgtttttctcaccttcaa 22770815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 29854665 - 29854607
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattc-acccctctttcttgtgtttttctcacattca 310  Q
    |||||||||||||| |||||||||||| ||| | | |||||||||||||||||| ||||    
T  29854665 aaaaagaagaaaaagctaacacaattcaacctccccttcttgtgtttttctcaccttca 29854607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 46797297 - 46797355
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaa 311  Q
    |||||||||||||||  |||||| |||| ||| | |||||||||||||||||| |||||    
T  46797297 aaaaagaagaaaaaatcaacacagttcaaccccccttcttgtgtttttctcaccttcaa 46797355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 314
Target Start/End: Complemental strand, 6089974 - 6089921
Alignment:
Q  261 gaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaatat 314  Q
    |||||| ||||||||||||| ||  | |||||||||||||||||| ||||||||    
T  6089974 gaaaaagctaacacaattcaacctcccttcttgtgtttttctcaccttcaatat 6089921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 314
Target Start/End: Complemental strand, 15647054 - 15646986
Alignment:
Q  246 ttagtttaaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaatat 314  Q
    ||||||||||||||||||||   | ||| | |||| ||||| ||||||||||| |||||| ||||||||    
T  15647054 ttagtttaaaaagaagaaaaggttgacatatttcaaccctccttcttgtgtttctctcaccttcaatat 15646986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 16305961 - 16306004
Alignment:
Q  268 ctaacacaattcacccctctttcttgtgtttttctcacattcaat 312  Q
    ||||||||||||| ||| ||||||||| |||||||||||||||||    
T  16305961 ctaacacaattcaaccc-ctttcttgtatttttctcacattcaat 16306004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 312
Target Start/End: Complemental strand, 21640093 - 21640033
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattca-cccctctttcttgtgtttttctcacattcaat 312  Q
    ||||||||||||||   ||||||||||| |||| | |||||||||||||||||| ||||||    
T  21640093 aaaaagaagaaaaagtaaacacaattcaacccccccttcttgtgtttttctcaccttcaat 21640033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 313
Target Start/End: Complemental strand, 51340212 - 51340168
Alignment:
Q  270 aacacaattca-cccctctttcttgtgtttttctcacattcaata 313  Q
    ||||||||||| |||||| |||||||||||||||||| |||||||    
T  51340212 aacacaattcaacccctccttcttgtgtttttctcactttcaata 51340168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 250 - 311
Target Start/End: Complemental strand, 87152 - 87091
Alignment:
Q  250 tttaaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaa 311  Q
    ||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||| |||||    
T  87152 tttaaaaagaagaaaaagctaacacaattcaaccctccttcttgtgtttttctcactttcaa 87091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 227 - 303
Target Start/End: Original strand, 23192680 - 23192757
Alignment:
Q  227 cagactctgaacattgaagttagtttaaaaagaagaaaaaactaacacaattc-acccctctttcttgtgtttttctc 303  Q
    |||||||| ||||||| | |||||||||||||||||||||||||||||||||| ||||  | ||||||||||||||||    
T  23192680 cagactctaaacattggacttagtttaaaaagaagaaaaaactaacacaattcaacccacccttcttgtgtttttctc 23192757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 230 - 305
Target Start/End: Complemental strand, 19491061 - 19490987
Alignment:
Q  230 actctgaacattgaagttagtttaaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcac 305  Q
    |||||||||  |||| ||||||||||||||||||||||||||||||||||| ||| |  |||||||||||||||||    
T  19491061 actctgaactctgaatttagtttaaaaagaagaaaaaactaacacaattcaaccc-ccctcttgtgtttttctcac 19490987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 246 - 311
Target Start/End: Complemental strand, 33052250 - 33052186
Alignment:
Q  246 ttagtttaaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaa 311  Q
    ||||||||||||||||||||| ||||||||||||| ||| ||||| |||||||||||||| |||||    
T  33052250 ttagtttaaaaagaagaaaaagctaacacaattcaaccc-ctttcctgtgtttttctcactttcaa 33052186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 253 - 312
Target Start/End: Original strand, 17541393 - 17541452
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaat 312  Q
    |||| ||||||||||||||||||||||| ||| | |||||||||||||||||| ||||||    
T  17541393 aaaatgaagaaaaaactaacacaattcaaccccccttcttgtgtttttctcaccttcaat 17541452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 1210604 - 1210662
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaa 311  Q
    |||||||||||||| ||||||||||||| ||| | |||||||||||||||||| |||||    
T  1210604 aaaaagaagaaaaagctaacacaattcaaccccccttcttgtgtttttctcaccttcaa 1210662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 13431522 - 13431579
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    |||||||||||||| ||||||||||||| ||| | |||||||||||||||||| ||||    
T  13431522 aaaaagaagaaaaagctaacacaattcaaccccccttcttgtgtttttctcaccttca 13431579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 253 - 305
Target Start/End: Complemental strand, 6407008 - 6406956
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcac 305  Q
    |||||||||||||||| ||||||||||| ||| | ||||||||||||||||||    
T  6407008 aaaaagaagaaaaaaccaacacaattcaacccccattcttgtgtttttctcac 6406956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 312
Target Start/End: Complemental strand, 17007557 - 17007498
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaat 312  Q
    |||| ||||||||||| ||||||||||| ||| | |||||||||||||||||| ||||||    
T  17007557 aaaacgaagaaaaaacaaacacaattcaaccccccttcttgtgtttttctcaccttcaat 17007498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 312
Target Start/End: Original strand, 17287067 - 17287126
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaat 312  Q
    |||||||||||||| | ||||||||||| ||| | |||||||||||||||||| ||||||    
T  17287067 aaaaagaagaaaaagccaacacaattcaaccccccttcttgtgtttttctcaccttcaat 17287126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 312
Target Start/End: Original strand, 40846308 - 40846367
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaat 312  Q
    |||||||||||||| ||||||||||||| ||| | ||||||| |||||||||| ||||||    
T  40846308 aaaaagaagaaaaagctaacacaattcaaccccccttcttgtatttttctcaccttcaat 40846367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 312
Target Start/End: Complemental strand, 18676899 - 18676845
Alignment:
Q  258 gaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaat 312  Q
    ||||||||| ||||||||||||| ||| | |||||||||||||||||| ||||||    
T  18676899 gaagaaaaagctaacacaattcaaccccccttcttgtgtttttctcaccttcaat 18676845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 311
Target Start/End: Complemental strand, 43773359 - 43773307
Alignment:
Q  259 aagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaa 311  Q
    |||||||| ||||||||||||| ||| | |||||||||||||||||| |||||    
T  43773359 aagaaaaagctaacacaattcaaccccccttcttgtgtttttctcaccttcaa 43773307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 300
Target Start/End: Complemental strand, 24667689 - 24667635
Alignment:
Q  246 ttagtttaaaaagaagaaaaaactaacacaattcacccctctttcttgtgttttt 300  Q
    |||||||||||| |||||||| ||||||||||||| ||  | |||||||||||||    
T  24667689 ttagtttaaaaataagaaaaagctaacacaattcaaccacccttcttgtgttttt 24667635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 300
Target Start/End: Original strand, 25850885 - 25850935
Alignment:
Q  250 tttaaaaagaagaaaaaactaacacaattcacccctctttcttgtgttttt 300  Q
    ||||||||||||||||| ||||||||||||| ||  | |||||||||||||    
T  25850885 tttaaaaagaagaaaaagctaacacaattcaacctcccttcttgtgttttt 25850935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 30422334 - 30422391
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattc-acccctctttcttgtgtttttctcacattca 310  Q
    |||||||||||||| | |||||||||| ||||||| |||||||||||||||||| ||||    
T  30422334 aaaaagaagaaaaagcaaacacaattcaacccctc-ttcttgtgtttttctcaccttca 30422391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 280
Target Start/End: Complemental strand, 17928367 - 17928315
Alignment:
Q  227 cagactctgaacattgaagttagtttaaaaagaagaaaaaactaacacaattca 280  Q
    |||||||||||||||||| ||||||| ||||||||||||| | ||||| |||||    
T  17928367 cagactctgaacattgaacttagttt-aaaagaagaaaaacccaacactattca 17928315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 25163318 - 25163261
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    |||| ||||||||| ||||||||||||| ||| | ||||| |||||||||||| ||||    
T  25163318 aaaacgaagaaaaagctaacacaattcaaccccccttcttatgtttttctcaccttca 25163261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 45539388 - 45539445
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    ||||||||||||||   ||||||||||| ||| | |||||||||||||||||| ||||    
T  45539388 aaaaagaagaaaaagaaaacacaattcaaccccccttcttgtgtttttctcaccttca 45539445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 310
Target Start/End: Complemental strand, 27739125 - 27739070
Alignment:
Q  254 aaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    ||||||||||||| ||||||||||||| ||| | ||||||| |||||||||| ||||    
T  27739125 aaaagaagaaaaagctaacacaattcaaccc-ccttcttgtatttttctcaccttca 27739070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 250 - 311
Target Start/End: Complemental strand, 22797664 - 22797603
Alignment:
Q  250 tttaaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaa 311  Q
    ||||||||||||||||||||||||||||||| ||| | |||||||||||||||||| |||||    
T  22797664 tttaaaaagaagaaaaaactaacacaattcaaccccccttcttgtgtttttctcaccttcaa 22797603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 227 - 314
Target Start/End: Original strand, 24450273 - 24450360
Alignment:
Q  227 cagactctgaacattgaagttagtttaaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaatat 314  Q
    |||||||| ||||||| | | |||||||||||||||||||   ||||||||||| ||| | |||||||||||||||||| ||||||||    
T  24450273 cagactctaaacattggactcagtttaaaaagaagaaaaagaaaacacaattcaaccccccttcttgtgtttttctcaccttcaatat 24450360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 253 - 312
Target Start/End: Complemental strand, 40780561 - 40780502
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaat 312  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||    
T  40780561 aaaacgaagaaaaaactaacacaattcaaccctccttcttgtgtttttctcaccttcaat 40780502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 246 - 310
Target Start/End: Original strand, 14794624 - 14794689
Alignment:
Q  246 ttagtttaaaaagaagaaaaaactaacacaattc-acccctctttcttgtgtttttctcacattca 310  Q
    ||||||||||||||||||||||| |||||||||| ||||| | |||||||||||||||||| ||||    
T  14794624 ttagtttaaaaagaagaaaaaacaaacacaattcaacccccccttcttgtgtttttctcaccttca 14794689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 241 - 312
Target Start/End: Original strand, 7687278 - 7687348
Alignment:
Q  241 tgaagttagtttaaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaat 312  Q
    |||| |||||||||||||||||||| |||||||||||||| ||| | ||||||| |||||||||| ||||||    
T  7687278 tgaacttagtttaaaaagaagaaaatactaacacaattcaaccc-ccttcttgtatttttctcaccttcaat 7687348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 31328821 - 31328879
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaa 311  Q
    |||||||||||||||| ||||||||||| ||| | |||||||||||||||||| |||||    
T  31328821 aaaaagaagaaaaaacaaacacaattcaaccccccttcttgtgtttttctcaccttcaa 31328879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 31335542 - 31335600
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaa 311  Q
    |||||||||||||||| ||||||||||| ||| | |||||||||||||||||| |||||    
T  31335542 aaaaagaagaaaaaacaaacacaattcaaccccccttcttgtgtttttctcaccttcaa 31335600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 311
Target Start/End: Complemental strand, 22790143 - 22790082
Alignment:
Q  250 tttaaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaa 311  Q
    ||||||||||||||||| |||||||||| || ||| |||| ||||||||||||||| |||||    
T  22790143 tttaaaaagaagaaaaatctaacacaatccaacccccttttttgtgtttttctcaccttcaa 22790082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 28551768 - 28551825
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    |||||||||||||| ||||||||||||| ||| | |||||||||||||||||| ||||    
T  28551768 aaaaagaagaaaaagctaacacaattcaaccccccttcttgtgtttttctcaccttca 28551825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 310
Target Start/End: Complemental strand, 6391916 - 6391861
Alignment:
Q  255 aaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    |||||||||||||| ||||||||||| ||| | |||||||||||||||||| ||||    
T  6391916 aaagaagaaaaaaccaacacaattcaaccccccttcttgtgtttttctcaccttca 6391861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 305
Target Start/End: Original strand, 16735815 - 16735869
Alignment:
Q  251 ttaaaaagaagaaaaaactaacacaattc-acccctctttcttgtgtttttctcac 305  Q
    ||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||    
T  16735815 ttaaaaagaagaaaaaactaacacaattcaacctctc-ttcttgtgtttttctcac 16735869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 312
Target Start/End: Original strand, 22782479 - 22782538
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaat 312  Q
    |||||||||||||| ||||||||||||| ||| | ||||||||||||| |||| ||||||    
T  22782479 aaaaagaagaaaaagctaacacaattcaaccccccttcttgtgtttttatcaccttcaat 22782538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 27294743 - 27294684
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattc-acccctctttcttgtgtttttctcacattcaa 311  Q
    |||| |||||||||||||||||||||| ||||| | |||||||||||||||||| |||||    
T  27294743 aaaacgaagaaaaaactaacacaattcaacccccccttcttgtgtttttctcaccttcaa 27294684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 19539704 - 19539647
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    |||| ||||||||| ||||||||||||| ||| | |||||||||||||||||| ||||    
T  19539704 aaaatgaagaaaaagctaacacaattcaaccccccttcttgtgtttttctcaccttca 19539647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 24851520 - 24851577
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    |||| ||||||||| | ||||||||||| ||||| |||||||||||||||||| ||||    
T  24851520 aaaacgaagaaaaagcaaacacaattcaaccctccttcttgtgtttttctcaccttca 24851577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 302
Target Start/End: Complemental strand, 25917973 - 25917916
Alignment:
Q  246 ttagtttaaaaagaagaaaaaactaacacaattc-acccctctttcttgtgtttttct 302  Q
    ||||||||||||||||||||| |||||||||||| | ||| | |||||||||||||||    
T  25917973 ttagtttaaaaagaagaaaaagctaacacaattcaaaccccccttcttgtgtttttct 25917916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 305
Target Start/End: Original strand, 19321189 - 19321265
Alignment:
Q  230 actctgaacattgaagttagtttaaaaagaagaaaaaactaacacaattc-acccctctttcttgtgtttttctcac 305  Q
    |||||| || ||||| ||||||  ||||||||||||| |||||| ||||| |||| || ||||||||||||||||||    
T  19321189 actctggactttgaacttagttagaaaagaagaaaaagctaacaaaattcaacccttcattcttgtgtttttctcac 19321265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 312
Target Start/End: Complemental strand, 24575284 - 24575224
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccct-ctttcttgtgtttttctcacattcaat 312  Q
    |||| ||||||||| ||||||||||||| |||| | |||||||||||||||||| ||||||    
T  24575284 aaaatgaagaaaaagctaacacaattcaacccttcattcttgtgtttttctcaccttcaat 24575224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 304
Target Start/End: Complemental strand, 16494598 - 16494547
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctca 304  Q
    |||||||||||||| ||||| ||||||| ||| | |||||||||||||||||    
T  16494598 aaaaagaagaaaaagctaacccaattcaaccccccttcttgtgtttttctca 16494547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 229 - 280
Target Start/End: Original strand, 21911635 - 21911686
Alignment:
Q  229 gactctgaacattgaagttagtttaaaaagaagaaaaaactaacacaattca 280  Q
    ||||||||| |||| | |||||||||||||||||||||  ||||||||||||    
T  21911635 gactctgaaaattggacttagtttaaaaagaagaaaaatttaacacaattca 21911686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 312
Target Start/End: Original strand, 28702072 - 28702131
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaat 312  Q
    ||||||||||||||   ||||||||||| ||| | |||||||||||||||||| ||||||    
T  28702072 aaaaagaagaaaaagaaaacacaattcaaccccccttcttgtgtttttctcaccttcaat 28702131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 300
Target Start/End: Complemental strand, 38780648 - 38780602
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgttttt 300  Q
    |||||||||||||||| ||||||||||||||| | |||||||||||||    
T  38780648 aaaaagaagaaaaaaccaacacaattcacccc-ccttcttgtgttttt 38780602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 22188955 - 22189013
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattc-acccctctttcttgtgtttttctcacattca 310  Q
    |||||||||||||||| |||||||||| | ||| | |||||||||||||||||| ||||    
T  22188955 aaaaagaagaaaaaaccaacacaattcaatcccccgttcttgtgtttttctcaccttca 22189013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 22455807 - 22455865
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattc-acccctctttcttgtgtttttctcacattca 310  Q
    |||| ||||||||| |||||||||||| ||||| | |||||||||||||||||| ||||    
T  22455807 aaaacgaagaaaaagctaacacaattcaacccccccttcttgtgtttttctcaccttca 22455865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 311
Target Start/End: Original strand, 22786502 - 22786563
Alignment:
Q  252 taaaaagaagaaaaaactaacacaattc--acccctctttcttgtgtttttctcacattcaa 311  Q
    ||||||||||||||| ||||||||||||  ||||| |  ||||||||||||||||| |||||    
T  22786502 taaaaagaagaaaaagctaacacaattcaaacccccccctcttgtgtttttctcaccttcaa 22786563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 305
Target Start/End: Original strand, 40203188 - 40203241
Alignment:
Q  251 ttaaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcac 305  Q
    ||||||||||||||||||||||| || ||| ||| | ||||||||||||||||||    
T  40203188 ttaaaaagaagaaaaaactaacataactcaaccc-ccttcttgtgtttttctcac 40203241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 280
Target Start/End: Complemental strand, 14866613 - 14866584
Alignment:
Q  251 ttaaaaagaagaaaaaactaacacaattca 280  Q
    ||||||||||||||||||||||||||||||    
T  14866613 ttaaaaagaagaaaaaactaacacaattca 14866584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 310
Target Start/End: Complemental strand, 22682703 - 22682642
Alignment:
Q  249 gtttaaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    ||||||||| ||||||||  |||||||||||| ||| | |||||||||||||| ||| ||||    
T  22682703 gtttaaaaataagaaaaagttaacacaattcaaccccccttcttgtgtttttcacaccttca 22682642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 41122526 - 41122583
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    |||| |||||||||   ||||||||||| ||||| |||||||||||||||||| ||||    
T  41122526 aaaacgaagaaaaagtaaacacaattcaaccctccttcttgtgtttttctcaccttca 41122583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 45087845 - 45087902
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    ||||||||||||||   ||||||||||| ||| | |||||||||||||||||| ||||    
T  45087845 aaaaagaagaaaaagaaaacacaattcaaccccccttcttgtgtttttctcaccttca 45087902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 305
Target Start/End: Original strand, 20569597 - 20569649
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcac 305  Q
    |||| |||||||||  |||||||||||| ||| | ||||||||||||||||||    
T  20569597 aaaacgaagaaaaagttaacacaattcaaccccccttcttgtgtttttctcac 20569649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 312
Target Start/End: Complemental strand, 22257441 - 22257381
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattca-cccctctttcttgtgtttttctcacattcaat 312  Q
    |||| ||||||||| ||||||||||| | |||| | |||||||||||||||||| ||||||    
T  22257441 aaaatgaagaaaaagctaacacaattgaacccccccttcttgtgtttttctcaccttcaat 22257381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 305
Target Start/End: Complemental strand, 25828406 - 25828354
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcac 305  Q
    |||| ||||||||| |||||| |||||| ||| | ||||||||||||||||||    
T  25828406 aaaacgaagaaaaagctaacataattcaaccccccttcttgtgtttttctcac 25828354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 23881 - 23823
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaa 311  Q
    |||||||||||||||| ||||||||||| ||||| |||||||||||||||||| |||||    
T  23881 aaaaagaagaaaaaaccaacacaattcaaccctccttcttgtgtttttctcaccttcaa 23823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 32543515 - 32543457
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaa 311  Q
    |||||||||||||| ||||||||||||| ||||| |||||||||||||||||| |||||    
T  32543515 aaaaagaagaaaaagctaacacaattcaaccctccttcttgtgtttttctcaccttcaa 32543457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 250 - 310
Target Start/End: Complemental strand, 15551295 - 15551235
Alignment:
Q  250 tttaaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    ||||||||||||||||| ||||||||||||| ||| | |||||||||||||||||| ||||    
T  15551295 tttaaaaagaagaaaaatctaacacaattcaaccccccttcttgtgtttttctcaccttca 15551235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 250 - 314
Target Start/End: Complemental strand, 26185046 - 26184982
Alignment:
Q  250 tttaaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaatat 314  Q
    |||||||||||||||||  |||||||||||| ||| | |||||||||||||||||| ||||||||    
T  26185046 tttaaaaagaagaaaaatttaacacaattcaacccacattcttgtgtttttctcaccttcaatat 26184982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 14101341 - 14101398
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    |||| ||||||||| ||||||||||||| ||| |||||||||||||||||||| ||||    
T  14101341 aaaacgaagaaaaagctaacacaattcaaccccctttcttgtgtttttctcaccttca 14101398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 227 - 310
Target Start/End: Original strand, 24471236 - 24471318
Alignment:
Q  227 cagactctgaacattgaagttagtttaaaaagaagaaaaaactaacacaattc-acccctctttcttgtgtttttctcacattca 310  Q
    |||||||||||| ||||| |||||| ||||||||||||||  ||||||||||| ||| ||| |||||||||||||||||| ||||    
T  24471236 cagactctgaactttgaacttagtt-aaaaagaagaaaaagttaacacaattcaaccactc-ttcttgtgtttttctcaccttca 24471318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 257 - 305
Target Start/End: Complemental strand, 32335081 - 32335033
Alignment:
Q  257 agaagaaaaaactaacacaattcacccctctttcttgtgtttttctcac 305  Q
    |||||||||| ||||||||||||| ||| ||||||||||||||||||||    
T  32335081 agaagaaaaagctaacacaattcaaccccctttcttgtgtttttctcac 32335033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 278
Target Start/End: Original strand, 14883811 - 14883862
Alignment:
Q  227 cagactctgaacattgaagttagtttaaaaagaagaaaaaactaacacaatt 278  Q
    |||||||||||||||  | ||||||||||||||||||||||| |||||||||    
T  14883811 cagactctgaacattatacttagtttaaaaagaagaaaaaacaaacacaatt 14883862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 10631389 - 10631331
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccct-ctttcttgtgtttttctcacattca 310  Q
    |||||||||||||| ||||||||||||| |||| | |||||||||||||||||| ||||    
T  10631389 aaaaagaagaaaaagctaacacaattcaaccctccattcttgtgtttttctcaccttca 10631331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 311
Target Start/End: Original strand, 15395553 - 15395615
Alignment:
Q  250 tttaaaaagaagaaaaaactaacacaattcacccctct-ttcttgtgtttttctcacattcaa 311  Q
    ||||||||||||||||| ||||||||||||| ||| || |||||||||||| ||||| |||||    
T  15395553 tttaaaaagaagaaaaagctaacacaattcaaccccctcttcttgtgttttgctcaccttcaa 15395615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 15532527 - 15532585
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattc-acccctctttcttgtgtttttctcacattca 310  Q
    |||||||||||||| |||||||||||| ||||||  |||||||||||||||||| ||||    
T  15532527 aaaaagaagaaaaagctaacacaattcaaccccttcttcttgtgtttttctcaccttca 15532585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 311
Target Start/End: Complemental strand, 19687985 - 19687927
Alignment:
Q  254 aaaagaagaaaaaactaacacaattcacccctct-ttcttgtgtttttctcacattcaa 311  Q
    ||||||||||||||| ||||||||||| ||| || |||||||||||||||||| |||||    
T  19687985 aaaagaagaaaaaaccaacacaattcaaccccctcttcttgtgtttttctcaccttcaa 19687927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 15301470 - 15301413
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    |||| ||||||||| ||||||||||||| ||| | |||||||||||||||||| ||||    
T  15301470 aaaacgaagaaaaagctaacacaattcaaccccccttcttgtgtttttctcaccttca 15301413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 310
Target Start/End: Original strand, 17446540 - 17446593
Alignment:
Q  257 agaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    ||||||||||  |||||||||||| || ||||||||||||||||||||| ||||    
T  17446540 agaagaaaaagttaacacaattcaaccttctttcttgtgtttttctcaccttca 17446593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 227 - 312
Target Start/End: Complemental strand, 19875150 - 19875065
Alignment:
Q  227 cagactctgaacattgaagttagtttaaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaat 312  Q
    |||| ||| ||||||| | ||||||| ||||  ||||||| ||||||||||||| ||| | ||| |||||||||||||| ||||||    
T  19875150 cagaatctaaacattggaattagttttaaaaagagaaaaatctaacacaattcaaccccccttcatgtgtttttctcaccttcaat 19875065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 311
Target Start/End: Complemental strand, 24398112 - 24398047
Alignment:
Q  246 ttagtttaaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaa 311  Q
    ||||||||||||||||||||| ||||||||||||| | | | || ||||||||| ||||| |||||    
T  24398112 ttagtttaaaaagaagaaaaatctaacacaattcaactccccttattgtgttttactcaccttcaa 24398047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 266
Target Start/End: Original strand, 18027548 - 18027587
Alignment:
Q  227 cagactctgaacattgaagttagtttaaaaagaagaaaaa 266  Q
    |||||||||||| ||||| |||||||||||||||||||||    
T  18027548 cagactctgaactttgaacttagtttaaaaagaagaaaaa 18027587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 259 - 310
Target Start/End: Complemental strand, 26588845 - 26588794
Alignment:
Q  259 aagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    |||||||| ||||||||||||| ||| | |||||||||||||||||| ||||    
T  26588845 aagaaaaagctaacacaattcaacccccattcttgtgtttttctcaccttca 26588794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 304
Target Start/End: Complemental strand, 26941658 - 26941607
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctca 304  Q
    |||| ||||||||| ||||||||||||| | | |||||||||||||||||||    
T  26941658 aaaacgaagaaaaagctaacacaattcaactccctttcttgtgtttttctca 26941607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 17380815 - 17380757
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattc-acccctctttcttgtgtttttctcacattca 310  Q
    |||||||||||||| | |||||||||| ||||| | |||||||||||||||||| ||||    
T  17380815 aaaaagaagaaaaagccaacacaattcaacccccccttcttgtgtttttctcaccttca 17380757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 21624344 - 21624286
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattc-acccctctttcttgtgtttttctcacattca 310  Q
    |||||||||||||| | |||||||||| ||||| | |||||||||||||||||| ||||    
T  21624344 aaaaagaagaaaaagccaacacaattcaacccccccttcttgtgtttttctcaccttca 21624286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 305
Target Start/End: Complemental strand, 30372623 - 30372577
Alignment:
Q  259 aagaaaaaactaacacaattcacccctctttcttgtgtttttctcac 305  Q
    ||||||||  |||||||||||| ||| ||||||||||||||||||||    
T  30372623 aagaaaaagttaacacaattcaaccccctttcttgtgtttttctcac 30372577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 280
Target Start/End: Original strand, 14924127 - 14924160
Alignment:
Q  247 tagtttaaaaagaagaaaaaactaacacaattca 280  Q
    ||||||||||||||||||||||||||| ||||||    
T  14924127 tagtttaaaaagaagaaaaaactaacataattca 14924160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 305
Target Start/End: Complemental strand, 16528567 - 16528514
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattc-acccctctttcttgtgtttttctcac 305  Q
    |||| ||||||||| |||||||||||| ||||| | ||||||||||||||||||    
T  16528567 aaaacgaagaaaaagctaacacaattcaacccccccttcttgtgtttttctcac 16528514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 22801395 - 22801339
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    ||||| |||||||| ||||||||||||| ||| | |||||||||||||||||| ||||    
T  22801395 aaaaataagaaaaagctaacacaattcaaccc-ccttcttgtgtttttctcaccttca 22801339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 311
Target Start/End: Original strand, 25777491 - 25777551
Alignment:
Q  251 ttaaaaagaagaaaaaactaacacaattcacccctct-ttcttgtgtttttctcacattcaa 311  Q
    ||||||| |||||||| ||||||||||||| |  ||| ||||||||||||||||||||||||    
T  25777491 ttaaaaataagaaaaatctaacacaattcaaca-tctcttcttgtgtttttctcacattcaa 25777551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 310
Target Start/End: Complemental strand, 3680351 - 3680299
Alignment:
Q  258 gaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    ||||||||||| ||||||||||| ||  | |||||||||||||||||| ||||    
T  3680351 gaagaaaaaacaaacacaattcaaccacccttcttgtgtttttctcaccttca 3680299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 314
Target Start/End: Original strand, 7752041 - 7752085
Alignment:
Q  270 aacacaattcacccctctttcttgtgtttttctcacattcaatat 314  Q
    ||||||||||| ||| | |||||||||||||||||| ||||||||    
T  7752041 aacacaattcaaccccccttcttgtgtttttctcaccttcaatat 7752085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 305
Target Start/End: Complemental strand, 29537868 - 29537820
Alignment:
Q  258 gaagaaaaaactaacacaattcacccct-ctttcttgtgtttttctcac 305  Q
    ||||||||||||||||||||||| || | | ||||||||||||||||||    
T  29537868 gaagaaaaaactaacacaattcaaccatcccttcttgtgtttttctcac 29537820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 31128121 - 31128157
Alignment:
Q  246 ttagtttaaaaagaagaaaaaactaacacaattcacc 282  Q
    |||||||||||||||||||||  ||||||||||||||    
T  31128121 ttagtttaaaaagaagaaaaagataacacaattcacc 31128157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0488 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0488
Description:

Target: scaffold0488; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 253 - 304
Target Start/End: Complemental strand, 11453 - 11402
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctca 304  Q
    |||||||||||||||||||||||||||| ||| | |||||||||||||||||    
T  11453 aaaaagaagaaaaaactaacacaattcaaccccccttcttgtgtttttctca 11402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 305
Target Start/End: Complemental strand, 23125212 - 23125161
Alignment:
Q  254 aaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcac 305  Q
    ||||||||||||| ||||||||||||| ||||| ||||||||||||||||||    
T  23125212 aaaagaagaaaaagctaacacaattcaaccctccttcttgtgtttttctcac 23125161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 251 - 310
Target Start/End: Original strand, 12223312 - 12223372
Alignment:
Q  251 ttaaaaagaagaaaaaactaacacaattcacccct-ctttcttgtgtttttctcacattca 310  Q
    |||||||||||||||| ||||||||||||| |||| | |||||||||||||||||| ||||    
T  12223312 ttaaaaagaagaaaaatctaacacaattcaaccctccattcttgtgtttttctcaccttca 12223372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 300
Target Start/End: Complemental strand, 16464283 - 16464228
Alignment:
Q  246 ttagtttaaaaagaagaaaaaactaacacaattc-acccctctttcttgtgttttt 300  Q
    |||||||||||||||||||||||||||||||||| |||||  | ||||||||||||    
T  16464283 ttagtttaaaaagaagaaaaaactaacacaattcaacccccatatcttgtgttttt 16464228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 4493796 - 4493739
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    |||| ||||||||| ||||||||||||| ||| | |||||||||||||||||| ||||    
T  4493796 aaaacgaagaaaaagctaacacaattcaaccccccttcttgtgtttttctcaccttca 4493739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 305
Target Start/End: Original strand, 16315443 - 16315496
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattca-cccctctttcttgtgtttttctcac 305  Q
    |||| ||||||||| ||||||||||||| |||||| ||||||||||||||||||    
T  16315443 aaaacgaagaaaaacctaacacaattcaacccctccttcttgtgtttttctcac 16315496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 311
Target Start/End: Original strand, 10884082 - 10884134
Alignment:
Q  259 aagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaa 311  Q
    |||||||| ||||||||||||| ||| | |||||||||||||||||| |||||    
T  10884082 aagaaaaagctaacacaattcaaccccccttcttgtgtttttctcaccttcaa 10884134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 305
Target Start/End: Complemental strand, 9802334 - 9802284
Alignment:
Q  254 aaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcac 305  Q
    ||||||||||||| ||||||||||||| ||| | ||||||||||||||||||    
T  9802334 aaaagaagaaaaatctaacacaattcaaccc-ccttcttgtgtttttctcac 9802284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 255 - 310
Target Start/End: Original strand, 16557518 - 16557573
Alignment:
Q  255 aaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    |||||||||||| | ||||||||||| ||| | |||||||||||||||||| ||||    
T  16557518 aaagaagaaaaagccaacacaattcaaccccccttcttgtgtttttctcaccttca 16557573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 255 - 310
Target Start/End: Complemental strand, 16608144 - 16608089
Alignment:
Q  255 aaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    |||||||||||| | ||||||||||| ||| | |||||||||||||||||| ||||    
T  16608144 aaagaagaaaaagccaacacaattcaaccccccttcttgtgtttttctcaccttca 16608089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 311
Target Start/End: Complemental strand, 16812312 - 16812234
Alignment:
Q  233 ctgaacattgaagttagtttaaaaagaagaaaaaactaacacaattc-acccctctttcttgtgtttttctcacattcaa 311  Q
    |||||| ||||| |||||| |||||||||||||| |||||||||||| ||| ||| || ||| ||||| |||||||||||    
T  16812312 ctgaactttgaacttagtt-aaaaagaagaaaaagctaacacaattcaacctctcctttttgcgttttcctcacattcaa 16812234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 311
Target Start/End: Complemental strand, 330899 - 330845
Alignment:
Q  258 gaagaaaaaactaacacaattca-cccctctttcttgtgtttttctcacattcaa 311  Q
    ||||||||||| ||||||||||| |||| | |||||||||||||||||| |||||    
T  330899 gaagaaaaaaccaacacaattcaacccccccttcttgtgtttttctcaccttcaa 330845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 1292305 - 1292247
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattc-acccctctttcttgtgtttttctcacattca 310  Q
    |||||||||||||| |||||||||||| ||| | | |||||||||||||||||| ||||    
T  1292305 aaaaagaagaaaaagctaacacaattcaacctccccttcttgtgtttttctcaccttca 1292247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 280
Target Start/End: Original strand, 11573010 - 11573044
Alignment:
Q  246 ttagtttaaaaagaagaaaaaactaacacaattca 280  Q
    |||||||||||| ||||||||||||||||||||||    
T  11573010 ttagtttaaaaataagaaaaaactaacacaattca 11573044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 13138831 - 13138889
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctct-ttcttgtgtttttctcacattca 310  Q
    |||||||||||||| | ||||||||||| ||| || |||||||||||||||||| ||||    
T  13138831 aaaaagaagaaaaagccaacacaattcaaccccctcttcttgtgtttttctcaccttca 13138889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 32265615 - 32265673
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattc-acccctctttcttgtgtttttctcacattca 310  Q
    |||||||||||||| |||||||||||| || || | |||||||||||||||||| ||||    
T  32265615 aaaaagaagaaaaacctaacacaattcaactcccccttcttgtgtttttctcaccttca 32265673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 33604156 - 33604098
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaa 311  Q
    |||| ||||||||| | ||||||||||| ||| | |||||||||||||||||| |||||    
T  33604156 aaaacgaagaaaaagccaacacaattcaaccccccttcttgtgtttttctcaccttcaa 33604098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 4549617 - 4549561
Alignment:
Q  246 ttagtttaaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctc 303  Q
    ||||||| |||||||||||||||||| |||||||| | | | ||||||||||||||||    
T  4549617 ttagttttaaaagaagaaaaaactaatacaattcaactc-ccttcttgtgtttttctc 4549561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 311
Target Start/End: Original strand, 11030279 - 11030336
Alignment:
Q  254 aaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaa 311  Q
    ||||| ||||||| ||||||||||||| || || ||||||||||||| |||| |||||    
T  11030279 aaaaggagaaaaatctaacacaattcaaccttcattcttgtgtttttttcaccttcaa 11030336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 11792122 - 11792065
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    |||| |||||||||  |||||||||||| ||| | |||||||||||||||||| ||||    
T  11792122 aaaacgaagaaaaagataacacaattcaaccccccttcttgtgtttttctcaccttca 11792065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 310
Target Start/End: Complemental strand, 19416494 - 19416433
Alignment:
Q  250 tttaaaaagaagaaaaaactaacacaattca-cccctctttcttgtgtttttctcacattca 310  Q
    ||||||||||||||||| ||||||||||||| || | | ||||| |||||||||||| ||||    
T  19416494 tttaaaaagaagaaaaagctaacacaattcatcctccccttcttatgtttttctcaccttca 19416433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 313
Target Start/End: Complemental strand, 30025186 - 30025125
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattca-cccctctttcttgtgtttttctcacattcaata 313  Q
    |||| ||||||||| | ||||||||||| |||| | |||||||||||||||||| |||||||    
T  30025186 aaaacgaagaaaaagcaaacacaattcaacccccccttcttgtgtttttctcaccttcaata 30025125  T

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Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 48063716 - 48063772
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    |||||||||||||||||| || |||||| ||| | |||||||||||||||||| ||||    
T  48063716 aaaaagaagaaaaaactagcataattcaaccc-ccttcttgtgtttttctcaccttca 48063772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 302
Target Start/End: Complemental strand, 9064858 - 9064806
Alignment:
Q  251 ttaaaaagaagaaaaaactaacacaattc-acccctctttcttgtgtttttct 302  Q
    |||||||||| ||||| |||||||||||| |||||  ||||||||||||||||    
T  9064858 ttaaaaagaaaaaaaagctaacacaattcaacccccttttcttgtgtttttct 9064806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 312
Target Start/End: Complemental strand, 14186938 - 14186878
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattca-cccctctttcttgtgtttttctcacattcaat 312  Q
    ||||||||||||||   ||||||||||| |||| | |||||||||||||||||| ||||||    
T  14186938 aaaaagaagaaaaagtaaacacaattcaacccccccttcttgtgtttttctcaccttcaat 14186878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 300
Target Start/End: Original strand, 23280882 - 23280930
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattc-acccctctttcttgtgttttt 300  Q
    |||||||||||||| |||||||||||| ||||| | |||||||||||||    
T  23280882 aaaaagaagaaaaatctaacacaattctacccccccttcttgtgttttt 23280930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 310
Target Start/End: Complemental strand, 250909 - 250845
Alignment:
Q  246 ttagtttaaaaagaagaaaaaactaacacaattc-acccctctttcttgtgtttttctcacattca 310  Q
    ||||||| |||||||||||||||||||||||||| ||| ||| |||||||||||||||||| ||||    
T  250909 ttagttttaaaagaagaaaaaactaacacaattcaacctctc-ttcttgtgtttttctcaccttca 250845  T

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Target: scaffold0011; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 145304 - 145364
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattca--cccctctttcttgtgtttttctcacattcaa 311  Q
    |||||||||||||| | |||||||||||  ||| || |||||||||||||||||| |||||    
T  145304 aaaaagaagaaaaagccaacacaattcaaccccatccttcttgtgtttttctcaccttcaa 145364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 253 - 312
Target Start/End: Original strand, 26506 - 26566
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattc-acccctctttcttgtgtttttctcacattcaat 312  Q
    |||||||||||||| |||||||||||| ||||| | |||||||||||||||||| ||||||    
T  26506 aaaaagaagaaaaagctaacacaattcaacccccccttcttgtgtttttctcaccttcaat 26566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0758 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 3575 - 3511
Alignment:
Q  246 ttagtttaaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaat 312  Q
    ||||||||||||||||||||||| ||||||||||| ||| |  ||||||||||||||| | ||||||    
T  3575 ttagtttaaaaagaagaaaaaaccaacacaattcaaccccc--tcttgtgtttttctcgccttcaat 3511  T

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Target: scaffold0022 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 312
Target Start/End: Complemental strand, 36683 - 36624
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaat 312  Q
    |||| ||||||||| ||||||||||||| ||| | |||||||||||||||||| ||||||    
T  36683 aaaacgaagaaaaagctaacacaattcaaccccccttcttgtgtttttctcaccttcaat 36624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 312
Target Start/End: Complemental strand, 134743 - 134684
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaat 312  Q
    |||| ||||||||| ||||||||||||| ||| | |||||||||||||||||| ||||||    
T  134743 aaaacgaagaaaaagctaacacaattcaaccccccttcttgtgtttttctcaccttcaat 134684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 311
Target Start/End: Complemental strand, 31052 - 30970
Alignment:
Q  230 actctgaacattgaagttagtttaaaaagaagaaaaaactaacacaattc-acccctctttcttgtgtttttctcacattcaa 311  Q
    ||||| ||||||| | |||| ||||||||||||| || |||||||||||| ||||| | |||||||||||| ||||| |||||    
T  31052 actctaaacattggacttagattaaaaagaagaacaatctaacacaattcaacccccccttcttgtgttttactcaccttcaa 30970  T

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Target: scaffold0007 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 305
Target Start/End: Complemental strand, 63587 - 63537
Alignment:
Q  255 aaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcac 305  Q
    |||||||||||||| ||||||||||| ||| | ||||||||||||||||||    
T  63587 aaagaagaaaaaacaaacacaattcaaccccccttcttgtgtttttctcac 63537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 18615 - 18672
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    ||||||||| |||||| |||| |||||| ||||| |||||||||||||||||| ||||    
T  18615 aaaaagaagcaaaaacaaacataattcaaccctccttcttgtgtttttctcaccttca 18672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 31843 - 31786
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    |||| ||||||||| ||||||||||||| ||| | |||||||||||||||||| ||||    
T  31843 aaaacgaagaaaaagctaacacaattcaaccccccttcttgtgtttttctcaccttca 31786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 312
Target Start/End: Complemental strand, 48570 - 48510
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattc-acccctctttcttgtgtttttctcacattcaat 312  Q
    |||| ||||||||| |||||||||||| ||||| | |||||||||||||||| | ||||||    
T  48570 aaaatgaagaaaaagctaacacaattcaacccccccttcttgtgtttttctctccttcaat 48510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 88456 - 88513
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    ||||||||||||||  |||||||||||| ||| | |||||||||||||||||| ||||    
T  88456 aaaaagaagaaaaagttaacacaattcaaccccccttcttgtgtttttctcaccttca 88513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 83550 - 83494
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    |||||||||||||| |||||||||||||  |||| |||||||||||||||||| ||||    
T  83550 aaaaagaagaaaaagctaacacaattca-acctcattcttgtgtttttctcaccttca 83494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0498 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0498
Description:

Target: scaffold0498; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 310
Target Start/End: Original strand, 4083 - 4166
Alignment:
Q  227 cagactctgaacattgaagttagtttaaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    |||||| ||||| ||||| |||||||||||||||||||||   ||||||||||| ||  | | ||||||| |||||||| ||||    
T  4083 cagactttgaaccttgaacttagtttaaaaagaagaaaaagtcaacacaattcaacctccctacttgtgtctttctcaccttca 4166  T

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Target: scaffold0364 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 258 - 305
Target Start/End: Complemental strand, 5422 - 5375
Alignment:
Q  258 gaagaaaaaactaacacaattcacccctctttcttgtgtttttctcac 305  Q
    ||||||||| ||||||||||||| ||| | ||||||||||||||||||    
T  5422 gaagaaaaagctaacacaattcaaccccccttcttgtgtttttctcac 5375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 312
Target Start/End: Complemental strand, 14368 - 14309
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattcaat 312  Q
    |||| ||||||||| ||||||||||||| ||| | ||||| ||||||||||| |||||||    
T  14368 aaaacgaagaaaaagctaacacaattcaacccccattcttatgtttttctcaaattcaat 14309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 378408 - 378467
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattc-acccctctttcttgtgtttttctcacattcaa 311  Q
    |||| ||||||||| |||||||||||| ||||||  |||||||||||||||||| |||||    
T  378408 aaaacgaagaaaaagctaacacaattcaaccccttcttcttgtgtttttctcactttcaa 378467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 312
Target Start/End: Original strand, 110448 - 110511
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattca----cccctctttcttgtgtttttctcacattcaat 312  Q
    |||| ||||||||||| |||||||||||    |||||| |||||||||||||||||| ||||||    
T  110448 aaaacgaagaaaaaaccaacacaattcaaccccccctccttcttgtgtttttctcaccttcaat 110511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 305
Target Start/End: Original strand, 20322 - 20373
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcac 305  Q
    |||| ||||||||||||||||||||||| ||| | ||||| ||||||||||||    
T  20322 aaaacgaagaaaaaactaacacaattcaaccc-ccttcttttgtttttctcac 20373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 2708 - 2651
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    |||| ||||||||| | ||||||||||| ||| | |||||||||||||||||| ||||    
T  2708 aaaatgaagaaaaagccaacacaattcaaccccccttcttgtgtttttctcaccttca 2651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 310
Target Start/End: Original strand, 813 - 866
Alignment:
Q  257 agaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    ||||||||||  |||||||||||| ||| | |||||||||||||||||| ||||    
T  813 agaagaaaaagttaacacaattcaaccccccttcttgtgtttttctcaccttca 866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0081 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 13248 - 13191
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    |||| ||||||||| ||||||||||||| ||| | || ||||||||||||||| ||||    
T  13248 aaaacgaagaaaaagctaacacaattcaacccccctttttgtgtttttctcaccttca 13191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0439 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0439
Description:

Target: scaffold0439; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 312
Target Start/End: Original strand, 7565 - 7625
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattcacccctctttcttgtg-tttttctcacattcaat 312  Q
    |||||||||||||| | ||||||||||| ||| | |||||||| |||||||||| ||||||    
T  7565 aaaaagaagaaaaagccaacacaattcaaccccccttcttgtgttttttctcaccttcaat 7625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 310
Target Start/End: Original strand, 1683 - 1735
Alignment:
Q  259 aagaaaaaactaacacaattca-cccctctttcttgtgtttttctcacattca 310  Q
    |||||||| ||||||||||||| |||| | |||||||||||||||||| ||||    
T  1683 aagaaaaacctaacacaattcaacccccccttcttgtgtttttctcaccttca 1735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0315 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0315
Description:

Target: scaffold0315; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 312
Target Start/End: Complemental strand, 7923 - 7864
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattca-cccctctttcttgtgtttttctcacattcaat 312  Q
    |||| ||||||||| ||||||||||||| |||||||| ||| |||||||||||| ||||||    
T  7923 aaaacgaagaaaaagctaacacaattcaacccctctt-cttatgtttttctcaccttcaat 7864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 312
Target Start/End: Original strand, 19511 - 19571
Alignment:
Q  253 aaaaagaagaaaaaactaacacaattca-cccctctttcttgtgtttttctcacattcaat 312  Q
    |||| ||||||||| | ||||||||||| |||| | |||||||||||||||||| ||||||    
T  19511 aaaacgaagaaaaagccaacacaattcaacccccccttcttgtgtttttctcaccttcaat 19571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 313
Target Start/End: Complemental strand, 7534 - 7482
Alignment:
Q  262 aaaaaactaacacaattca-cccctctttcttgtgtttttctcacattcaata 313  Q
    ||||||||||||||||||| |||| |  ||||||||||||||||| |||||||    
T  7534 aaaaaactaacacaattcaccccccccctcttgtgtttttctcaccttcaata 7482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 310
Target Start/End: Original strand, 112797 - 112837
Alignment:
Q  270 aacacaattcacccctctttcttgtgtttttctcacattca 310  Q
    ||||||||||| ||| |||||||||||||||||||| ||||    
T  112797 aacacaattcaaccccctttcttgtgtttttctcaccttca 112837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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