View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3780_low_5 (Length: 333)
Name: NF3780_low_5
Description: NF3780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3780_low_5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 333
Target Start/End: Complemental strand, 15263719 - 15263402
Alignment:
| Q |
17 |
aaaactccttgaaaaagagaaagaaatatgtattataaataaaattcttgattatattatacatatacacacaacacaaatata----gttgaatcaaaa |
112 |
Q |
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| T |
15263719 |
aaaactccttgaaaaagagaaagaaatatatattataaataaaattcttgattatat-atacatatacacacaacacaaatatatatagttgaattaaaa |
15263621 |
T |
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| Q |
113 |
tattttaaatattcatagtttcattcatatactaaactcattcactataatttaaaggatttaactatctattttcttcttcnnnnnnnnnnnnnnctgt |
212 |
Q |
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| T |
15263620 |
tattttaaatattcatagtttcattcatatactaaactcattcactataatttaaaggatttaactatctattttcttcttc--aaaaaaaataaactgt |
15263523 |
T |
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| Q |
213 |
ctattttatagttttaggcataacaagttataatagaatattttataaattaattagcttaggtgcagtatagtattacatgaggaatggcatacaatta |
312 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
15263522 |
ctattttatagttttaggcataacaaattataatagaatattttctaaattaattagtttaggtgcagtatagtattacatgaggaatggcatacaatta |
15263423 |
T |
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| Q |
313 |
aagcattgaagagtctcttcc |
333 |
Q |
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||||||||||||||||||||| |
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| T |
15263422 |
aagcattgaagagtctcttcc |
15263402 |
T |
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