View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3780_low_7 (Length: 282)
Name: NF3780_low_7
Description: NF3780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3780_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 8 - 266
Target Start/End: Complemental strand, 25997532 - 25997274
Alignment:
| Q |
8 |
tgagatgaatcaagaagttgtgaaagtaatcttggattgcaagaaagacatatggaacagccaagaactgtttgagctggttgaagaatattttgaaaac |
107 |
Q |
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| T |
25997532 |
tgagatgaatcaagaagttgtgaaagtaatcttggattgcaagaaagacatatggaacagccaagatctgtttgagctggttgaagaatattttgaaaac |
25997433 |
T |
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| Q |
108 |
agtttgcagacattggatttctgcactgcattggagaagtgcttgaaaagagctagggatagccaattgcttattcttgttgcgattcaacggttcgagg |
207 |
Q |
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| T |
25997432 |
agtttgcaaacattggatttctgcactgcattggagaagtgcttgaaaagagctagggatagccaattgcttattcttgttgcgattcaacggttcgagg |
25997333 |
T |
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| Q |
208 |
aagaatctgaatcaggagacaaatgctatgcaagaacattgcaagaattgaagaatttt |
266 |
Q |
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| T |
25997332 |
aagaatctgaatcaggagacaaatgctatgcaagaacattgcaagaattgaagaatttt |
25997274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 182
Target Start/End: Complemental strand, 12558478 - 12558305
Alignment:
| Q |
9 |
gagatgaatcaagaagttgtgaaagtaatcttggattgcaagaaagacatatggaacagccaagaactgtttgagctggttgaagaatattttgaaaaca |
108 |
Q |
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||||||||||| ||||||||||| |||||||| || || |||||||| |||||||| || ||||||||||||||||| ||||| || || ||||| || | |
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| T |
12558478 |
gagatgaatcaggaagttgtgaaggtaatcttagactgtaagaaagatatatggaagagtcaagaactgtttgagcttgttgaggagtactttgataata |
12558379 |
T |
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| Q |
109 |
gtttgcagacattggatttctgcactgcattggagaagtgcttgaaaagagctagggatagccaattgcttatt |
182 |
Q |
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| T |
12558378 |
gcttgaagactctagatttctgcaatgctttagagaagtgtctgaagagagccagggatagtcaattgcttatt |
12558305 |
T |
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