View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3781_high_13 (Length: 379)
Name: NF3781_high_13
Description: NF3781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3781_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 2 - 188
Target Start/End: Complemental strand, 47287279 - 47287093
Alignment:
| Q |
2 |
atcattcaaatcaatatatatttcattaatttcgtacactaaacaaacccaaatcccaccaacactttactagtaaaatattaatctaactactagctac |
101 |
Q |
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| T |
47287279 |
atcattcaaatcaatatatatttcattaatttcgtacactaaacaaacccaaatcccaccaacactttactagtaaaatattaatccaactactagctac |
47287180 |
T |
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| Q |
102 |
tcaattccaacactctacctccttttctcttctaacccacccaaaatgagctctatcacattaatcttaattttcttcatactatct |
188 |
Q |
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| T |
47287179 |
tcaattccaacactctacctccttttctcttctaacccacccaaaatgagctctatcacattaatcctaattttcttcatactatct |
47287093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 273 - 365
Target Start/End: Complemental strand, 47287005 - 47286913
Alignment:
| Q |
273 |
ccctctagcaatcaaggagaatgggaactaatacaaccaaccattggcatttcagctatgcacatgcaactttcacacaacaataaaatcata |
365 |
Q |
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| T |
47287005 |
ccctctagcaatcaaggagaatgggaactaatacaaccaaccattggcatttcagctatgcacatgcaactttcacacaacaataaaatcata |
47286913 |
T |
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