View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3781_high_21 (Length: 323)
Name: NF3781_high_21
Description: NF3781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3781_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 161 - 315
Target Start/End: Complemental strand, 29487688 - 29487534
Alignment:
| Q |
161 |
cttgaagagtagagagtcaaatctaaaataaggcgaacaatcacacatcacgtgcacaattcaacgcatctgcatgcgaacacgaaactaaattatagaa |
260 |
Q |
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| T |
29487688 |
cttgaagggtagagagtcaaatccaaaataaggcgaacaatcacacgtcacgtgcacaattcaacgcatcaacatacgaacacgaaactaaattataaaa |
29487589 |
T |
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| Q |
261 |
aaagagtatcatcgtgacaaccgataaatcgtcccgtccaccacaactctctgct |
315 |
Q |
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| T |
29487588 |
aaagagtatcatcgtgacaaccgataaatcgacccgtccaccacaactctctgct |
29487534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 29487831 - 29487777
Alignment:
| Q |
18 |
catattcctagaaaatttaatcccaaccataaattttgtaaccaagaaacaaata |
72 |
Q |
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| T |
29487831 |
catattcctaaaaaatttaatcccgaccataaattttgtaaccaagaaacaaata |
29487777 |
T |
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