View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3781_high_27 (Length: 276)

Name: NF3781_high_27
Description: NF3781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3781_high_27
NF3781_high_27
[»] chr1 (2 HSPs)
chr1 (20-266)||(7580668-7580914)
chr1 (20-266)||(7100332-7100578)
[»] chr5 (18 HSPs)
chr5 (20-237)||(17983809-17984026)
chr5 (26-258)||(30207439-30207671)
chr5 (26-266)||(30061289-30061529)
chr5 (26-266)||(30337474-30337714)
chr5 (26-266)||(30750563-30750803)
chr5 (26-258)||(29873091-29873323)
chr5 (26-266)||(29854228-29854468)
chr5 (27-261)||(30400992-30401226)
chr5 (26-266)||(17417542-17417782)
chr5 (26-245)||(30712398-30712617)
chr5 (26-251)||(30484318-30484543)
chr5 (26-261)||(30476292-30476527)
chr5 (26-266)||(30436730-30436970)
chr5 (38-266)||(30676237-30676465)
chr5 (66-252)||(30520588-30520774)
chr5 (66-252)||(30560928-30561114)
chr5 (31-266)||(30241330-30241565)
chr5 (74-224)||(30330200-30330350)
[»] chr3 (3 HSPs)
chr3 (26-258)||(25292904-25293136)
chr3 (116-183)||(38939073-38939140)
chr3 (116-154)||(7053009-7053047)
[»] chr7 (1 HSPs)
chr7 (26-251)||(26708249-26708474)
[»] chr4 (3 HSPs)
chr4 (20-266)||(13617508-13617756)
chr4 (26-258)||(52352876-52353108)
chr4 (26-251)||(20295546-20295771)
[»] chr8 (1 HSPs)
chr8 (116-183)||(13378471-13378538)
[»] scaffold0256 (1 HSPs)
scaffold0256 (119-183)||(9527-9591)


Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 20 - 266
Target Start/End: Complemental strand, 7580914 - 7580668
Alignment:
Q  20 gtcatggattctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcaccctatcat 119  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7580914 gtcatggattctataatggaacacaaaatccccttgaccgagaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcaccctatcat 7580815  T
Q  120 cgttgtagaccaattgagcaagagttgtttttccaacaccacctaaaccaacaattggatagacggaaaggaagtccgagtccctcgcttgggtgagaag 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7580814 cgttgtagaccaattgagcaagagttgtttttccaacaccacctaaaccaacaattggatagacggaaaggaagtccgagtccctcgcttgggtgagaag 7580715  T
Q  220 aaactcaacaatcctctctttatcatcttctcgtccaaacacctttg 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  7580714 aaactcaacaatcctctctttatcatcttctcgtccaaacacctttg 7580668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 20 - 266
Target Start/End: Original strand, 7100332 - 7100578
Alignment:
Q  20 gtcatggattctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcaccctatcat 119  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7100332 gtcatggattctataatggaacacaaaatccccttgactgagaaaacctctgaaacacaaacccaaatttttgttttgaaattgtcactcaccctatcat 7100431  T
Q  120 cgttgtagaccaattgagcaagagttgtttttccaacaccacctaaaccaacaattggatagacggaaaggaagtccgagtccctcgcttgggtgagaag 219  Q
    | ||||| |||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| |||||| | ||||||||||||||    
T  7100432 cattgtaaaccaattgagaaagagttgtttttccaacaccacctaaaccgacaatgggatagacggataggaagtcagagtcctttgcttgggtgagaag 7100531  T
Q  220 aaactcaacaatcctctctttatcatcttctcgtccaaacacctttg 266  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||    
T  7100532 aaactcaacaatcttctctttatcatcttctcgtccaaacatctttg 7100578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 154; Significance: 9e-82; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 20 - 237
Target Start/End: Original strand, 17983809 - 17984026
Alignment:
Q  20 gtcatggattctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcaccctatcat 119  Q
    |||||||||||||||| |||||||||||| |||||||||||||| |||| |||||| |||||||||||||||||||||||| | | ||||||  ||||||    
T  17983809 gtcatggattctataacggaacacaaaattcccttgactgagaaaacctttgaaacccaaacccaaatttttgttttgaaaatttcactcacgttatcat 17983908  T
Q  120 cgttgtagaccaattgagcaagagttgtttttccaacaccacctaaaccaacaattggatagacggaaaggaagtccgagtccctcgcttgggtgagaag 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||  ||||||||||||||||||    
T  17983909 cgttgtagaccaattgagcaagagttgtttttccaacaccacctaacccaacaatgggatagacggaaaggaagtcagagaacctcgcttgggtgagaag 17984008  T
Q  220 aaactcaacaatcctctc 237  Q
    ||||||||||||| ||||    
T  17984009 aaactcaacaatcttctc 17984026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 26 - 258
Target Start/End: Original strand, 30207439 - 30207671
Alignment:
Q  26 gattctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcaccctatcatcgttgt 125  Q
    |||||||||||||| |||||||||| |||||| |||||   ||| |||||||||||||| |||||||| || ||||||  |||||||||| |||| ||||    
T  30207439 gattctataatggagcacaaaatcctcttgaccgagaaagtctcggaaacacaaacccatatttttgtattaaaattgctactcaccctagcatcattgt 30207538  T
Q  126 agaccaattgagcaagagttgtttttccaacaccacctaaaccaacaattggatagacggaaaggaagtccgagtccctcgcttgggtgagaagaaactc 225  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  30207539 agaccaattgaacaagagttgtttttccaacaccacctaaaccaacaatgggatagacggaaaggaagtcggagtccctcgcttgggtgagaagaaactc 30207638  T
Q  226 aacaatcctctctttatcatcttctcgtccaaa 258  Q
     | |||| ||||||||||||||||||| |||||    
T  30207639 gataatcttctctttatcatcttctcgcccaaa 30207671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 26 - 266
Target Start/End: Original strand, 30061289 - 30061529
Alignment:
Q  26 gattctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcaccctatcatcgttgt 125  Q
    ||||||||||| ||||||||||||| ||| || |||||   ||| ||||||||||||||||||||| |||  ||||||  |||||||||| |||| ||||    
T  30061289 gattctataatagaacacaaaatcctctttaccgagaaagtctcagaaacacaaacccaaatttttttttcaaaattgccactcaccctaacatcattgt 30061388  T
Q  126 agaccaattgagcaagagttgtttttccaacaccacctaaaccaacaattggatagacggaaaggaagtccgagtccctcgcttgggtgagaagaaactc 225  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  30061389 agaccaattgaacaagagttgtttttccaacaccacctaaaccaactatgggatagacggaaaggaagtcagagtcccttgcttgggtgagaagaaactc 30061488  T
Q  226 aacaatcctctctttatcatcttctcgtccaaacacctttg 266  Q
    ||||||| | ||||||||| |||||||||||||||| ||||    
T  30061489 aacaatcttttctttatcaacttctcgtccaaacacttttg 30061529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 26 - 266
Target Start/End: Complemental strand, 30337714 - 30337474
Alignment:
Q  26 gattctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcaccctatcatcgttgt 125  Q
    ||||||||||| ||||||||||||| ||| || |||||   ||| ||||||||||||||||||||| |||  ||||||  |||||||||| |||| ||||    
T  30337714 gattctataatagaacacaaaatcctctttaccgagaaagtctcagaaacacaaacccaaatttttttttcaaaattgccactcaccctaacatcattgt 30337615  T
Q  126 agaccaattgagcaagagttgtttttccaacaccacctaaaccaacaattggatagacggaaaggaagtccgagtccctcgcttgggtgagaagaaactc 225  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  30337614 agaccaattgaacaagagttgtttttccaacaccacctaaaccaactatgggatagacggaaaggaagtcagagtccttcgcttgggtgagaagaaactc 30337515  T
Q  226 aacaatcctctctttatcatcttctcgtccaaacacctttg 266  Q
    ||||||| | ||||||||| |||||||||||||||| ||||    
T  30337514 aacaatcttttctttatcaacttctcgtccaaacacttttg 30337474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 26 - 266
Target Start/End: Original strand, 30750563 - 30750803
Alignment:
Q  26 gattctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcaccctatcatcgttgt 125  Q
    ||||||||||| ||||||||||||| ||| || |||||   ||| ||||||||||||||||||||| |||  ||||||| |||||||||| |||| ||||    
T  30750563 gattctataatagaacacaaaatcctctttaccgagaaagtctcagaaacacaaacccaaatttttttttcaaaattgtcactcaccctaacatcattgt 30750662  T
Q  126 agaccaattgagcaagagttgtttttccaacaccacctaaaccaacaattggatagacggaaaggaagtccgagtccctcgcttgggtgagaagaaactc 225  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  30750663 agaccaattgaacaagagttgtttttccaacaccacctaaaccaactatgggatagacggaaaggaagtcagagtcccttgcttgggtgagaagaaactc 30750762  T
Q  226 aacaatcctctctttatcatcttctcgtccaaacacctttg 266  Q
    | ||||| | ||||||||| |||||||||||||||| ||||    
T  30750763 agcaatcttttctttatcaacttctcgtccaaacacttttg 30750803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 26 - 258
Target Start/End: Original strand, 29873091 - 29873323
Alignment:
Q  26 gattctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcaccctatcatcgttgt 125  Q
    |||||||||||||||||  |||||| |||||| |||||   ||| ||||||||||||||||| ||| | |  ||||||  |||||||||| |||| ||||    
T  29873091 gattctataatggaacaacaaatcctcttgacagagaaagtctcagaaacacaaacccaaatatttttgtcaaaattgccactcaccctaacatcattgt 29873190  T
Q  126 agaccaattgagcaagagttgtttttccaacaccacctaaaccaacaattggatagacggaaaggaagtccgagtccctcgcttgggtgagaagaaactc 225  Q
    ||||||||||| | |||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29873191 agaccaattgaacgagagttgtttttccaataccacctaaaccaacaatgggatagacggaaaggaagtcagagtccctcgcttgggtgagaagaaactc 29873290  T
Q  226 aacaatcctctctttatcatcttctcgtccaaa 258  Q
    ||||||| | |||||||||||||||||||||||    
T  29873291 aacaatcttttctttatcatcttctcgtccaaa 29873323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 26 - 266
Target Start/End: Original strand, 29854228 - 29854468
Alignment:
Q  26 gattctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcaccctatcatcgttgt 125  Q
    ||||||| ||| ||||||||||| | ||||||||||||    || ||||| ||||||||||||||| | |  ||||||  |||||||||| |||| ||||    
T  29854228 gattctacaatagaacacaaaattctcttgactgagaaagtttcagaaacgcaaacccaaatttttttatcaaaattgccactcaccctaacatcattgt 29854327  T
Q  126 agaccaattgagcaagagttgtttttccaacaccacctaaaccaacaattggatagacggaaaggaagtccgagtccctcgcttgggtgagaagaaactc 225  Q
    |||||||||||  |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  29854328 agaccaattgaagaagagttgtttttccaacaccacctaaaccaaaaatgggatagacggaaaggaagtctgagtccctcgtttgggtgagaagaaactc 29854427  T
Q  226 aacaatcctctctttatcatcttctcgtccaaacacctttg 266  Q
    ||||||| | |||||||||||||||||||||||||| ||||    
T  29854428 aacaatcttttctttatcatcttctcgtccaaacacttttg 29854468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 27 - 261
Target Start/End: Original strand, 30400992 - 30401226
Alignment:
Q  27 attctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcaccctatcatcgttgta 126  Q
    |||||||||| ||||||||||||| |||||| |||||   ||| |||||||||||||||  | || | |  |||| ||  ||||||||| |||| |||||    
T  30400992 attctataatagaacacaaaatcctcttgacagagaaagtctcggaaacacaaacccaagatcttatgtcaaaatagtccctcaccctaacatcattgta 30401091  T
Q  127 gaccaattgagcaagagttgtttttccaacaccacctaaaccaacaattggatagacggaaaggaagtccgagtccctcgcttgggtgagaagaaactca 226  Q
    |||||||||| ||||||||||||| |||| |||||||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  30401092 gaccaattgaacaagagttgttttaccaataccacctaaaccaacaatggggtagacggaaaggaagtcagagtccctcgcatgggtgagaagaaactca 30401191  T
Q  227 acaatcctctctttatcatcttctcgtccaaacac 261  Q
    | |||| | ||||||||||||| ||||||||||||    
T  30401192 aaaatcttttctttatcatcttttcgtccaaacac 30401226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 26 - 266
Target Start/End: Complemental strand, 17417782 - 17417542
Alignment:
Q  26 gattctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcaccctatcatcgttgt 125  Q
    |||||||| |||||||||||||||| ||||| ||||||  | || |||||||||| |||||||||||| || ||||||  |||||||||| |||| ||||    
T  17417782 gattctatgatggaacacaaaatcctcttgattgagaaagcatcagaaacacaaatccaaatttttgtattaaaattgctactcaccctaacatcattgt 17417683  T
Q  126 agaccaattgagcaagagttgtttttccaacaccacctaaaccaacaattggatagacggaaaggaagtccgagtccctcgcttgggtgagaagaaactc 225  Q
    ||||||||||||| ||||||||||| |||| ||||||||| ||||| || |||||||| |||||||  ||  | ||||| ||||||||||| ||||||||    
T  17417682 agaccaattgagctagagttgttttaccaataccacctaacccaactatgggatagactgaaaggatttcacaatcccttgcttgggtgagcagaaactc 17417583  T
Q  226 aacaatcctctctttatcatcttctcgtccaaacacctttg 266  Q
    ||||||| ||| | |||||||||| ||||||||||||||||    
T  17417582 aacaatcttctttgtatcatcttcccgtccaaacacctttg 17417542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 26 - 245
Target Start/End: Complemental strand, 30712617 - 30712398
Alignment:
Q  26 gattctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcaccctatcatcgttgt 125  Q
    |||||||||||  |||||||||||| |||||| |||||   ||| |||||||||||||||| |||| | |  |||||| ||||||||||| |||| ||||    
T  30712617 gattctataatacaacacaaaatcctcttgaccgagaaagtctcagaaacacaaacccaaaattttttatcaaaattgcgactcaccctaacatcattgt 30712518  T
Q  126 agaccaattgagcaagagttgtttttccaacaccacctaaaccaacaattggatagacggaaaggaagtccgagtccctcgcttgggtgagaagaaactc 225  Q
    ||| ||||||| |||||||||||||||||| |||||||||||||||||| |||||||| |||| |||||| |||||| |||| |||||||||||||||||    
T  30712517 agatcaattgaacaagagttgtttttccaataccacctaaaccaacaatgggatagacagaaatgaagtcagagtccttcgcatgggtgagaagaaactc 30712418  T
Q  226 aacaatcctctctttatcat 245  Q
     |||||| | ||||||||||    
T  30712417 gacaatcttttctttatcat 30712398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 26 - 251
Target Start/End: Original strand, 30484318 - 30484543
Alignment:
Q  26 gattctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcaccctatcatcgttgt 125  Q
    |||||||||||  |||||||||||| |||||| |||||   ||| ||||||||||||||||||||| | |  |||||| ||||||||||| |||| ||||    
T  30484318 gattctataatacaacacaaaatcctcttgaccgagaaagtctcagaaacacaaacccaaatttttttatcaaaattgcgactcaccctaacatcattgt 30484417  T
Q  126 agaccaattgagcaagagttgtttttccaacaccacctaaaccaacaattggatagacggaaaggaagtccgagtccctcgcttgggtgagaagaaactc 225  Q
    ||| ||||||| |||||||||||||||||| |||||||||||||||||| |||||||| |||| |||||  |||||| |||| | |||||||||||||||    
T  30484418 agatcaattgaacaagagttgtttttccaataccacctaaaccaacaatgggatagacagaaatgaagttagagtccttcgcataggtgagaagaaactc 30484517  T
Q  226 aacaatcctctctttatcatcttctc 251  Q
     |||||| | ||||||||||| ||||    
T  30484518 gacaatcttttctttatcatcgtctc 30484543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 26 - 261
Target Start/End: Original strand, 30476292 - 30476527
Alignment:
Q  26 gattctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcaccctatcatcgttgt 125  Q
    |||||||||||||||||||||||||  ||||| |||||   ||| |||||||||| ||||| |||||| || ||||||  ||| ||||||| ||| ||||    
T  30476292 gattctataatggaacacaaaatccttttgacagagaaagtctccgaaacacaaatccaaacttttgtattaaaattgctacttaccctatgatcattgt 30476391  T
Q  126 agaccaattgagcaagagttgtttttccaacaccacctaaaccaacaattggatagacggaaaggaagtccgagtccctcgcttgggtgagaagaaactc 225  Q
    |||||| ||||||||| |||||||| |||||||||||||  |||||||| ||||||| ||| |||||||| ||  |   |||||||||||||||||||||    
T  30476392 agaccatttgagcaagtgttgttttaccaacaccacctaggccaacaataggatagatggataggaagtcagatacttgcgcttgggtgagaagaaactc 30476491  T
Q  226 aacaatcctctctttatcatcttctcgtccaaacac 261  Q
     |||||||||||| |||||||| |||||||||||||    
T  30476492 gacaatcctctctctatcatctactcgtccaaacac 30476527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 26 - 266
Target Start/End: Original strand, 30436730 - 30436970
Alignment:
Q  26 gattctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcaccctatcatcgttgt 125  Q
    ||||||||||| |||||||||||||  ||||| |||||   ||| ||||||||||||||||||||| | |  |||||| ||||||||||| |||| ||||    
T  30436730 gattctataatagaacacaaaatccttttgaccgagaaagtctcagaaacacaaacccaaatttttttatcaaaattgcgactcaccctaacatcattgt 30436829  T
Q  126 agaccaattgagcaagagttgtttttccaacaccacctaaaccaacaattggatagacggaaaggaagtccgagtccctcgcttgggtgagaagaaactc 225  Q
    ||| ||||||| |||||||||||||||||| |||||||||||||||||  |||||||| ||||  ||||| |||||| ||||  |||| ||||||||||     
T  30436830 agatcaattgaacaagagttgtttttccaataccacctaaaccaacaacgggatagacagaaataaagtcagagtccttcgcaagggtaagaagaaactg 30436929  T
Q  226 aacaatcctctctttatcatcttctcgtccaaacacctttg 266  Q
     |||||| | ||||||||||| |||| ||| ||||| ||||    
T  30436930 gacaatcttttctttatcatcgtctcttcctaacacttttg 30436970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 38 - 266
Target Start/End: Complemental strand, 30676465 - 30676237
Alignment:
Q  38 gaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcaccctatcatcgttgtagaccaattgag 137  Q
    ||||||||||||| |||||| |||||   ||| |||||||||||||||| |||| | |  |||| |  |||||||||| |||| ||| ||| |||||||     
T  30676465 gaacacaaaatcctcttgaccgagaaagtctcagaaacacaaacccaaacttttttatcaaaatggccactcaccctaacatcattgaagatcaattgaa 30676366  T
Q  138 caagagttgtttttccaacaccacctaaaccaacaattggatagacggaaaggaagtccgagtccctcgcttgggtgagaagaaactcaacaatcctctc 237  Q
    |||||||||||||||||| |||||||||||||| ||| |||||||| |||| |||||| |||||| |||| ||||||||||||||||| |||||| | ||    
T  30676365 caagagttgtttttccaataccacctaaaccaaaaatgggatagacagaaatgaagtcagagtccttcgcatgggtgagaagaaactcgacaatcttttc 30676266  T
Q  238 tttatcatcttctcgtccaaacacctttg 266  Q
    || |||| |||||||||||||||| ||||    
T  30676265 ttgatcaacttctcgtccaaacacttttg 30676237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 66 - 252
Target Start/End: Complemental strand, 30520774 - 30520588
Alignment:
Q  66 cctctgaaacacaaacccaaatttttgttttgaaattgtgactcaccctatcatcgttgtagaccaattgagcaagagttgtttttccaacaccacctaa 165  Q
    |||| ||||||||||||||||||||||| |  ||||||| ||||||||  | ||| || || || |||||||||||||||||||| |||| |||||||||    
T  30520774 cctcagaaacacaaacccaaatttttgtatcaaaattgtcactcacccggtgatcattataaactaattgagcaagagttgttttcccaataccacctaa 30520675  T
Q  166 accaacaattggatagacggaaaggaagtccgagtccctcgcttgggtgagaagaaactcaacaatcctctctttatcatcttctcg 252  Q
     |||||||||||||||| |||||||| ||| ||| || | |||||||||||||||||||| |||||| |||||||||||||||||||    
T  30520674 gccaacaattggatagatggaaaggaggtcagagccctttgcttgggtgagaagaaactcgacaatcttctctttatcatcttctcg 30520588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 66 - 252
Target Start/End: Complemental strand, 30561114 - 30560928
Alignment:
Q  66 cctctgaaacacaaacccaaatttttgttttgaaattgtgactcaccctatcatcgttgtagaccaattgagcaagagttgtttttccaacaccacctaa 165  Q
    |||| ||||||||||||||||||||||| |  ||||||| ||||||||  | ||| || || || |||||||||||||||||||| |||| |||||||||    
T  30561114 cctcagaaacacaaacccaaatttttgtatcaaaattgtcactcacccggtgatcattataaactaattgagcaagagttgttttcccaataccacctaa 30561015  T
Q  166 accaacaattggatagacggaaaggaagtccgagtccctcgcttgggtgagaagaaactcaacaatcctctctttatcatcttctcg 252  Q
     |||||||||||||||| |||||||| ||| ||| || | |||||||||||||||||||| |||||| |||||||||||||||||||    
T  30561014 gccaacaattggatagatggaaaggaggtcagagccctttgcttgggtgagaagaaactcgacaatcttctctttatcatcttctcg 30560928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 31 - 266
Target Start/End: Complemental strand, 30241565 - 30241330
Alignment:
Q  31 tataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcaccctatcatcgttgtagacc 130  Q
    ||||||||||||||||||||  ||||| |||||   ||| |||||||||||||||| ||| || || ||||||  ||||||  || |||| |||||||||    
T  30241565 tataatggaacacaaaatcctgttgacagagaaattctcagaaacacaaacccaaactttagtattaaaattgctactcacggtaacatcattgtagacc 30241466  T
Q  131 aattgagcaagagttgtttttccaacaccacctaaaccaacaattggatagacggaaaggaagtccgagtccctcgcttgggtgagaagaaactcaacaa 230  Q
     |||||  |||||| |||||||||| ||||||||| |||| ||  ||||||| |||||||||||| |||||| | |||||||||||||||||||  | ||    
T  30241465 gattgaagaagagtggtttttccaagaccacctaacccaaaaacgggatagatggaaaggaagtcggagtcctttgcttgggtgagaagaaactggataa 30241366  T
Q  231 tcctctctttatcatcttctcgtccaaacacctttg 266  Q
    || ||| |||||| ||||||||||||||||| ||||    
T  30241365 tcttctttttatcgtcttctcgtccaaacacttttg 30241330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 74 - 224
Target Start/End: Complemental strand, 30330350 - 30330200
Alignment:
Q  74 acacaaacccaaatttttgttttgaaattgtgactcaccctatcatcgttgtagaccaattgagcaagagttgtttttccaacaccacctaaaccaacaa 173  Q
    ||||||||||||||| || | || |||||   ||||||||||  ||| | || || |||| || ||| |||||||||||||| ||| ||||||||||| |    
T  30330350 acacaaacccaaattattatattaaaatttccactcaccctaatatcatcgtggatcaatcgaacaatagttgtttttccaatacctcctaaaccaacta 30330251  T
Q  174 ttggatagacggaaaggaagtccgagtccctcgcttgggtgagaagaaact 224  Q
    | ||||||| |||||||||||| | ||||||||||||||||||||||||||    
T  30330250 tgggatagatggaaaggaagtcagtgtccctcgcttgggtgagaagaaact 30330200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 26 - 258
Target Start/End: Complemental strand, 25293136 - 25292904
Alignment:
Q  26 gattctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcaccctatcatcgttgt 125  Q
    ||||||||||||||||||||||||| |||||| |||||   ||| ||||||||||||||||||||||| || ||| ||  |||||||||| |||| ||||    
T  25293136 gattctataatggaacacaaaatcctcttgaccgagaaagtctcagaaacacaaacccaaatttttgtattaaaagtgctactcaccctaacatcattgt 25293037  T
Q  126 agaccaattgagcaagagttgtttttccaacaccacctaaaccaacaattggatagacggaaaggaagtccgagtccctcgcttgggtgagaagaaactc 225  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||| |||||||| |||||||||||    
T  25293036 agaccaattgaacaagagttgtttttccaacaccacctaaaccaacaatgggatggacggaaaggaagtcagagtcccttgcttgggtaagaagaaactc 25292937  T
Q  226 aacaatcctctctttatcatcttctcgtccaaa 258  Q
     ||| || |||||||||||||||||||||||||    
T  25292936 gacagtcttctctttatcatcttctcgtccaaa 25292904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 183
Target Start/End: Complemental strand, 38939140 - 38939073
Alignment:
Q  116 tcatcgttgtagaccaattgagcaagagttgtttttccaacaccacctaaaccaacaattggatagac 183  Q
    |||| ||||||||||||||||||||| ||||||||||||   ||||||| ||||||||| | ||||||    
T  38939140 tcattgttgtagaccaattgagcaagtgttgtttttccatatccacctagaccaacaatggaatagac 38939073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 154
Target Start/End: Complemental strand, 7053047 - 7053009
Alignment:
Q  116 tcatcgttgtagaccaattgagcaagagttgtttttcca 154  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  7053047 tcatcgttatagaccaattgagcaagtgttgtttttcca 7053009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 26 - 251
Target Start/End: Original strand, 26708249 - 26708474
Alignment:
Q  26 gattctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcaccctatcatcgttgt 125  Q
    ||||||||||| ||||||||||||| ||||||||||||   ||| ||||||||||||||||||||| | |  ||||||| |||||||||| |||||||||    
T  26708249 gattctataatagaacacaaaatcctcttgactgagaaagtctcagaaacacaaacccaaatttttttatcaaaattgtcactcaccctaacatcgttgt 26708348  T
Q  126 agaccaattgagcaagagttgtttttccaacaccacctaaaccaacaattggatagacggaaaggaagtccgagtccctcgcttgggtgagaagaaactc 225  Q
    ||| ||| ||| |||||||||||||||||| ||||||||| |||||||| |||||||| |||| |||||| |||||| |||| |||||||||||||||||    
T  26708349 agatcaactgaacaagagttgtttttccaataccacctaagccaacaatgggatagacagaaatgaagtcagagtccttcgcatgggtgagaagaaactc 26708448  T
Q  226 aacaatcctctctttatcatcttctc 251  Q
     |||||| | ||||||||||| ||||    
T  26708449 gacaatcttttctttatcatcgtctc 26708474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 20 - 266
Target Start/End: Original strand, 13617508 - 13617756
Alignment:
Q  20 gtcatggattctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcaccctatcat 119  Q
    |||||||||||||||||||||  |||||| | || || |||||| |||||| ||| ||| ||||||||||||||||||||||||| || |||| ||||||    
T  13617508 gtcatggattctataatggaaagcaaaattctctagattgagaaaacctctaaaatacatacccaaatttttgttttgaaattgtcacccaccttatcat 13617607  T
Q  120 cgttgtagaccaattgagcaagagttgtttttc--caacaccacctaaaccaacaattggatagacggaaaggaagtccgagtccctcgcttgggtgaga 217  Q
    | || ||||| | ||||||| ||||| |||||   |||||||||||||||||||||| |||||| | ||||| ||||| ||| ||||| |||||||||||    
T  13617608 cattttagacaatttgagcaggagttttttttttgcaacaccacctaaaccaacaatgggatagtcagaaagaaagtcagaggccctcacttgggtgaga 13617707  T
Q  218 agaaactcaacaatcctctctttatcatcttctcgtccaaacacctttg 266  Q
     |||||  ||||||| ||||||||| ||||| |||||||||||||||||    
T  13617708 tgaaacctaacaatcttctctttattatcttatcgtccaaacacctttg 13617756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 26 - 258
Target Start/End: Original strand, 52352876 - 52353108
Alignment:
Q  26 gattctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcaccctatcatcgttgt 125  Q
    |||||||||||||||||||||||||  ||||| |||||  |||| ||||||||||||||||||||| | |  || || | |||||| ||| |||| ||||    
T  52352876 gattctataatggaacacaaaatcctattgacagagaaatcctcagaaacacaaacccaaatttttctatgaaattttttactcactctaacatcattgt 52352975  T
Q  126 agaccaattgagcaagagttgtttttccaacaccacctaaaccaacaattggatagacggaaaggaagtccgagtccctcgcttgggtgagaagaaactc 225  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||| ||   |||||||||  | |  |||||||||||||||||||||||    
T  52352976 agaccaattgaacaagagttgttttaccaacaccacctaaaccaacaataggatacacaacaaggaagtcaaacttactcgcttgggtgagaagaaactc 52353075  T
Q  226 aacaatcctctctttatcatcttctcgtccaaa 258  Q
      ||||| |||||||||| ||||  ||||||||    
T  52353076 ggcaatcttctctttatcttctttccgtccaaa 52353108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 26 - 251
Target Start/End: Complemental strand, 20295771 - 20295546
Alignment:
Q  26 gattctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcaccctatcatcgttgt 125  Q
    ||||||||||| |||| |||||||| || ||  |||||   ||| |||||||||||||||||| || | |  ||||||  |||||| | |||||| ||||    
T  20295771 gattctataatagaacgcaaaatcctctcgaaggagaaagtctcagaaacacaaacccaaattcttttatcaaaattgccactcacgcgatcatcattgt 20295672  T
Q  126 agaccaattgagcaagagttgtttttccaacaccacctaaaccaacaattggatagacggaaaggaagtccgagtccctcgcttgggtgagaagaaactc 225  Q
    |||| |||||| |||||||||||||||||| |||||||||||||||||| |||||||| |||| |||||| |||||| |||| |||||||||||||||||    
T  20295671 agactaattgaacaagagttgtttttccaataccacctaaaccaacaatgggatagacagaaatgaagtcagagtccttcgcatgggtgagaagaaactc 20295572  T
Q  226 aacaatcctctctttatcatcttctc 251  Q
     |||||| | | ||||||||| ||||    
T  20295571 gacaatcttttttttatcatcgtctc 20295546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 183
Target Start/End: Original strand, 13378471 - 13378538
Alignment:
Q  116 tcatcgttgtagaccaattgagcaagagttgtttttccaacaccacctaaaccaacaattggatagac 183  Q
    ||||||||||| |||||||||||||| ||||||||||||   |||||||  |||||||| | ||||||    
T  13378471 tcatcgttgtacaccaattgagcaagtgttgtttttccatatccacctaggccaacaatggaatagac 13378538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 9527 - 9591
Alignment:
Q  119 tcgttgtagaccaattgagcaagagttgtttttccaacaccacctaaaccaacaattggatagac 183  Q
    |||||||| |||||||||||||| ||||||||||||   |||||||  |||||||| | ||||||    
T  9527 tcgttgtaaaccaattgagcaagtgttgtttttccatatccacctaggccaacaatggaatagac 9591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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