View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3781_high_34 (Length: 248)

Name: NF3781_high_34
Description: NF3781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3781_high_34
NF3781_high_34
[»] chr2 (15 HSPs)
chr2 (18-248)||(13501020-13501248)
chr2 (137-181)||(43586014-43586058)
chr2 (123-232)||(33884043-33884150)
chr2 (140-181)||(14450804-14450845)
chr2 (141-181)||(24067263-24067303)
chr2 (135-175)||(31026699-31026739)
chr2 (130-177)||(18512155-18512202)
chr2 (135-177)||(16630799-16630841)
chr2 (136-177)||(11518317-11518358)
chr2 (123-184)||(39399904-39399965)
chr2 (136-180)||(11439800-11439844)
chr2 (145-173)||(12933753-12933781)
chr2 (135-175)||(18570976-18571016)
chr2 (123-175)||(30298462-30298514)
chr2 (101-173)||(42043214-42043286)
[»] scaffold0024 (1 HSPs)
scaffold0024 (101-181)||(18117-18197)
[»] chr7 (15 HSPs)
chr7 (120-181)||(1885562-1885623)
chr7 (137-181)||(5937430-5937474)
chr7 (137-181)||(44317295-44317339)
chr7 (138-177)||(2144552-2144591)
chr7 (122-177)||(35238197-35238252)
chr7 (120-181)||(22801750-22801811)
chr7 (141-177)||(2143866-2143902)
chr7 (137-181)||(48964071-48964115)
chr7 (150-181)||(25956464-25956495)
chr7 (123-177)||(18750868-18750922)
chr7 (120-173)||(10702561-10702613)
chr7 (76-109)||(13300491-13300524)
chr7 (145-177)||(10893882-10893914)
chr7 (135-175)||(38134421-38134461)
chr7 (149-177)||(44172903-44172931)
[»] chr6 (17 HSPs)
chr6 (135-181)||(10031574-10031620)
chr6 (136-181)||(6751891-6751936)
chr6 (120-181)||(19369806-19369867)
chr6 (129-181)||(5579652-5579704)
chr6 (138-175)||(5635903-5635940)
chr6 (123-168)||(23130857-23130902)
chr6 (136-173)||(29959180-29959217)
chr6 (89-177)||(34625692-34625780)
chr6 (123-178)||(1334653-1334708)
chr6 (138-177)||(14514795-14514834)
chr6 (135-177)||(3449888-3449930)
chr6 (123-181)||(22745950-22746007)
chr6 (137-181)||(785464-785509)
chr6 (140-181)||(31327824-31327865)
chr6 (124-177)||(34868170-34868223)
chr6 (105-173)||(7377953-7378021)
chr6 (149-177)||(10158002-10158030)
[»] chr8 (11 HSPs)
chr8 (120-181)||(26915249-26915310)
chr8 (120-181)||(42874511-42874572)
chr8 (123-183)||(22600521-22600581)
chr8 (135-181)||(27733851-27733897)
chr8 (141-181)||(31119097-31119137)
chr8 (120-181)||(2652328-2652388)
chr8 (130-181)||(34073987-34074038)
chr8 (137-174)||(6960692-6960729)
chr8 (136-181)||(24295146-24295191)
chr8 (137-181)||(10497825-10497869)
chr8 (145-177)||(32691757-32691789)
[»] chr4 (15 HSPs)
chr4 (137-181)||(13307883-13307927)
chr4 (135-181)||(44362670-44362716)
chr4 (120-175)||(34589721-34589776)
chr4 (135-181)||(37496708-37496754)
chr4 (101-175)||(56049847-56049920)
chr4 (141-177)||(9298943-9298979)
chr4 (138-181)||(13117436-13117479)
chr4 (142-177)||(22799906-22799941)
chr4 (137-172)||(28663498-28663533)
chr4 (151-181)||(10164863-10164893)
chr4 (137-178)||(10634996-10635037)
chr4 (105-181)||(5998791-5998867)
chr4 (141-177)||(9298809-9298845)
chr4 (138-181)||(13484030-13484074)
chr4 (135-175)||(18513256-18513296)
[»] chr5 (16 HSPs)
chr5 (137-180)||(30080511-30080554)
chr5 (122-181)||(21319954-21320013)
chr5 (131-184)||(15294931-15294984)
chr5 (124-181)||(38784799-38784856)
chr5 (135-175)||(26205775-26205815)
chr5 (135-181)||(19167585-19167632)
chr5 (138-177)||(42192283-42192322)
chr5 (113-175)||(2039864-2039926)
chr5 (122-180)||(7621245-7621303)
chr5 (105-175)||(11596470-11596540)
chr5 (140-181)||(16207600-16207641)
chr5 (123-163)||(309150-309190)
chr5 (145-177)||(645346-645378)
chr5 (149-177)||(10009844-10009872)
chr5 (122-173)||(38866444-38866496)
chr5 (123-175)||(43208289-43208341)
[»] scaffold0314 (1 HSPs)
scaffold0314 (136-181)||(8953-8998)
[»] chr1 (8 HSPs)
chr1 (122-175)||(19637759-19637812)
chr1 (141-175)||(50233411-50233445)
chr1 (129-177)||(14332407-14332454)
chr1 (141-181)||(18946043-18946083)
chr1 (141-180)||(24462280-24462319)
chr1 (118-177)||(40176590-40176649)
chr1 (123-181)||(40686767-40686825)
chr1 (124-181)||(7988460-7988517)
[»] chr3 (6 HSPs)
chr3 (129-181)||(49179724-49179776)
chr3 (136-178)||(14338495-14338537)
chr3 (126-173)||(24399660-24399707)
chr3 (136-177)||(52558141-52558182)
chr3 (149-177)||(34409355-34409383)
chr3 (132-180)||(42076759-42076807)
[»] scaffold0504 (1 HSPs)
scaffold0504 (137-181)||(8706-8750)
[»] scaffold0122 (1 HSPs)
scaffold0122 (186-231)||(10252-10297)


Alignment Details
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 13501248 - 13501020
Alignment:
Q  18 catattaatatcatgaccattattacttgatatatttaggtttttaaaaattggtatacaagaatttgtctaaaactatgaagcacggacaccagacaca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||    
T  13501248 catattaatatcatgaccattattacttgatatatttaggtttttaaaaattggta--caagaatttgtctaaaactatgaagcacagacaccagacaca 13501151  T
Q  118 aaacggacacatcgacgccgataaaattttaagaaaatgacataattcaatgtaatcacaagtgccgtcgtgtcggacgtcaggacgcaccttcaatcag 217  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||| ||| |||||||||||||    
T  13501150 acacggacacatcgacgccgataaaattttaagaaaatgacataattcaatgtaatcacaagtgtcgtgatgtcggacgtcaagacacaccttcaatcag 13501051  T
Q  218 aaatgtctgtgcaacttaggtctaaaataac 248  Q
    || |||| |||||||||| ||||||||||||    
T  13501050 aagtgtcggtgcaacttacgtctaaaataac 13501020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 43586058 - 43586014
Alignment:
Q  137 gataaaattttaagaaaatgacataattcaatgtaatcacaagtg 181  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  43586058 gataaaattttgagaaaatgacataattcaatgtaatcacaagtg 43586014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 123 - 232
Target Start/End: Original strand, 33884043 - 33884150
Alignment:
Q  123 gacacatcgacgccgataaaattttaagaaaatgacataattcaatgtaatcacaagtgccgtcgtgtcggacgtcaggacgcaccttcaatcagaaatg 222  Q
    ||||||||||  ||||||||||| | |||||||||||| ||||| |||||| ||||||| ||  |||||| ||  |||| ||||||||||||||||| ||    
T  33884043 gacacatcgataccgataaaattgtgagaaaatgacatgattcagtgtaattacaagtgtcg--gtgtcgaacaccaggccgcaccttcaatcagaagtg 33884140  T
Q  223 tctgtgcaac 232  Q
     | |||||||    
T  33884141 gcagtgcaac 33884150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 181
Target Start/End: Complemental strand, 14450845 - 14450804
Alignment:
Q  140 aaaattttaagaaaatgacataattcaatgtaatcacaagtg 181  Q
    |||||||| ||||||| |||||||||||||||||||||||||    
T  14450845 aaaattttgagaaaatcacataattcaatgtaatcacaagtg 14450804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 24067263 - 24067303
Alignment:
Q  141 aaattttaagaaaatgacataattcaatgtaatcacaagtg 181  Q
    |||||||  ||||||||||||||||||||||||||||||||    
T  24067263 aaattttgtgaaaatgacataattcaatgtaatcacaagtg 24067303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 31026699 - 31026739
Alignment:
Q  135 ccgataaaattttaagaaaatgacataattcaatgtaatca 175  Q
    ||||||| | |||||||||||||||||||||||||||||||    
T  31026699 ccgataataatttaagaaaatgacataattcaatgtaatca 31026739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 177
Target Start/End: Complemental strand, 18512202 - 18512155
Alignment:
Q  130 cgacgccgataaaattttaagaaaatgacataattcaatgtaatcaca 177  Q
    |||| ||||||||||||| ||||||| | |||||||||||||||||||    
T  18512202 cgacaccgataaaattttgagaaaataatataattcaatgtaatcaca 18512155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 177
Target Start/End: Original strand, 16630799 - 16630841
Alignment:
Q  135 ccgataaaattttaagaaaatgacataattcaatgtaatcaca 177  Q
    ||||||| | |||||||||||||||||||||||| ||||||||    
T  16630799 ccgataataatttaagaaaatgacataattcaatttaatcaca 16630841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 177
Target Start/End: Original strand, 11518317 - 11518358
Alignment:
Q  136 cgataaaattttaagaaaatgacataattcaatgtaatcaca 177  Q
    |||||||||||||||| |||||  ||||||||||||||||||    
T  11518317 cgataaaattttaagacaatgaagtaattcaatgtaatcaca 11518358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 184
Target Start/End: Original strand, 39399904 - 39399965
Alignment:
Q  123 gacacatcgacgccgataaaattttaagaaaatgacataattcaatgtaatcacaagtgccg 184  Q
    ||||||| ||| ||||| ||||||| |||||||||||||||||||  || ||||| ||||||    
T  39399904 gacacattgacaccgatgaaatttttagaaaatgacataattcaacctattcacatgtgccg 39399965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 11439800 - 11439844
Alignment:
Q  136 cgataaaattttaagaaaatgacataattcaatgtaatcacaagt 180  Q
    |||||||||| | ||||||| |||||||||| |||||||||||||    
T  11439800 cgataaaattatgagaaaataacataattcagtgtaatcacaagt 11439844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 173
Target Start/End: Complemental strand, 12933781 - 12933753
Alignment:
Q  145 tttaagaaaatgacataattcaatgtaat 173  Q
    |||||||||||||||||||||||||||||    
T  12933781 tttaagaaaatgacataattcaatgtaat 12933753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 18570976 - 18571016
Alignment:
Q  135 ccgataaaattttaagaaaatgacataattcaatgtaatca 175  Q
    ||||||| | ||| |||||||||||||||||||||||||||    
T  18570976 ccgataataatttgagaaaatgacataattcaatgtaatca 18571016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 30298514 - 30298462
Alignment:
Q  123 gacacatcgacgccgataaaattttaagaaaatgacataattcaatgtaatca 175  Q
    ||||| ||||| ||||||| | ||||| |||||||||||||||| ||||||||    
T  30298514 gacacgtcgacaccgataataatttaataaaatgacataattcagtgtaatca 30298462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 173
Target Start/End: Complemental strand, 42043286 - 42043214
Alignment:
Q  101 cacggacaccagacacaaaacggacacatcgacgccgataaaattttaagaaaatgacataattcaatgtaat 173  Q
    |||||| |||| |||||| ||||||||||| || ||||||| | ||||| |||||||  ||||| ||||||||    
T  42043286 cacggataccatacacaacacggacacatcaacaccgataataatttaataaaatgaattaattgaatgtaat 42043214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 101 - 181
Target Start/End: Complemental strand, 18197 - 18117
Alignment:
Q  101 cacggacaccagacacaaaacggacacatcgacgccgataaaattttaagaaaatgacataattcaatgtaatcacaagtg 181  Q
    |||||||||||||||| | || ||||| ||||| ||||||||||||| ||||||| |||||||||||||||||| ||||||    
T  18197 cacggacaccagacacgacactgacacgtcgacaccgataaaattttgagaaaataacataattcaatgtaatcgcaagtg 18117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 120 - 181
Target Start/End: Original strand, 1885562 - 1885623
Alignment:
Q  120 acggacacatcgacgccgataaaattttaagaaaatgacataattcaatgtaatcacaagtg 181  Q
    |||||||||||||| | ||||||||||| | |||||||||||||||||||||||||||||||    
T  1885562 acggacacatcgacacggataaaattttgaaaaaatgacataattcaatgtaatcacaagtg 1885623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 5937474 - 5937430
Alignment:
Q  137 gataaaattttaagaaaatgacataattcaatgtaatcacaagtg 181  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  5937474 gataaaattttgagaaaatgacataattcaatgtaatcacaagtg 5937430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 44317339 - 44317295
Alignment:
Q  137 gataaaattttaagaaaatgacataattcaatgtaatcacaagtg 181  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||    
T  44317339 gataaaattttaaaaaaatgacataattcaatgtaatcataagtg 44317295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 177
Target Start/End: Complemental strand, 2144591 - 2144552
Alignment:
Q  138 ataaaattttaagaaaatgacataattcaatgtaatcaca 177  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  2144591 ataaaattttgagaaaatgacataattcaatgtaatcaca 2144552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 177
Target Start/End: Complemental strand, 35238252 - 35238197
Alignment:
Q  122 ggacacatcgacgccgataaaattttaagaaaatgacataattcaatgtaatcaca 177  Q
    |||||||| ||| ||||||| ||||| |||||||||||||||||||| ||||||||    
T  35238252 ggacacattgacaccgataatattttgagaaaatgacataattcaatataatcaca 35238197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 22801811 - 22801750
Alignment:
Q  120 acggacacatcgacgccgataaaattttaagaaaatgacataattcaatgtaatcacaagtg 181  Q
    |||||||| || || ||||| ||||||| ||| |||||||||||||| ||||||||||||||    
T  22801811 acggacacgtcaacaccgatcaaattttgagataatgacataattcactgtaatcacaagtg 22801750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 177
Target Start/End: Complemental strand, 2143902 - 2143866
Alignment:
Q  141 aaattttaagaaaatgacataattcaatgtaatcaca 177  Q
    ||||||| |||||||||||||||||||||||||||||    
T  2143902 aaattttgagaaaatgacataattcaatgtaatcaca 2143866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 48964115 - 48964071
Alignment:
Q  137 gataaaattttaagaaaatgacataattcaatgtaatcacaagtg 181  Q
    ||||||||| | |||||||||||||||||||| ||||||||||||    
T  48964115 gataaaattgtgagaaaatgacataattcaatttaatcacaagtg 48964071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 181
Target Start/End: Original strand, 25956464 - 25956495
Alignment:
Q  150 gaaaatgacataattcaatgtaatcacaagtg 181  Q
    ||||||||||||||||||||||||||||||||    
T  25956464 gaaaatgacataattcaatgtaatcacaagtg 25956495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 177
Target Start/End: Original strand, 18750868 - 18750922
Alignment:
Q  123 gacacatcgacgccgataaaattttaagaaaatgacataattcaatgtaatcaca 177  Q
    |||||||||||  || ||| | |||||||||||||||||||| ||||||||||||    
T  18750868 gacacatcgacaacggtaataatttaagaaaatgacataattgaatgtaatcaca 18750922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 173
Target Start/End: Complemental strand, 10702613 - 10702561
Alignment:
Q  120 acggacacatcgacgccgataaaattttaagaaaatgacataattcaatgtaat 173  Q
    |||||||||||||  | ||||||||||| |||||||||||| ||||||||||||    
T  10702613 acggacacatcgatactgataaaattttgagaaaatgacat-attcaatgtaat 10702561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 109
Target Start/End: Complemental strand, 13300524 - 13300491
Alignment:
Q  76 caagaatttgtctaaaactatgaagcacggacac 109  Q
    |||| |||||||||||||||||||||||||||||    
T  13300524 caagtatttgtctaaaactatgaagcacggacac 13300491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 10893914 - 10893882
Alignment:
Q  145 tttaagaaaatgacataattcaatgtaatcaca 177  Q
    |||||||||||||||||||| ||||||||||||    
T  10893914 tttaagaaaatgacataattgaatgtaatcaca 10893882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 38134461 - 38134421
Alignment:
Q  135 ccgataaaattttaagaaaatgacataattcaatgtaatca 175  Q
    ||||||| | ||| |||||||||||||||||||||||||||    
T  38134461 ccgataataatttgagaaaatgacataattcaatgtaatca 38134421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 177
Target Start/End: Complemental strand, 44172931 - 44172903
Alignment:
Q  149 agaaaatgacataattcaatgtaatcaca 177  Q
    |||||||||||||||||||||||||||||    
T  44172931 agaaaatgacataattcaatgtaatcaca 44172903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 135 - 181
Target Start/End: Original strand, 10031574 - 10031620
Alignment:
Q  135 ccgataaaattttaagaaaatgacataattcaatgtaatcacaagtg 181  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||    
T  10031574 ccgataaaattttgagaaaatgacataattcaatgtaatcacaagtg 10031620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 6751936 - 6751891
Alignment:
Q  136 cgataaaattttaagaaaatgacataattcaatgtaatcacaagtg 181  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
T  6751936 cgataaaattttgagaaaatgacataattcaatgtaatcacaagtg 6751891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 181
Target Start/End: Original strand, 19369806 - 19369867
Alignment:
Q  120 acggacacatcgacgccgataaaattttaagaaaatgacataattcaatgtaatcacaagtg 181  Q
    |||||||| | ||| | ||||||||||| |||||||||||||||||||||||||||||||||    
T  19369806 acggacacgttgacacggataaaattttgagaaaatgacataattcaatgtaatcacaagtg 19369867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 5579652 - 5579704
Alignment:
Q  129 tcgacgccgataaaattttaagaaaatgacataattcaatgtaatcacaagtg 181  Q
    ||||| ||||||||||||| ||||||||||||| ||||||||| |||||||||    
T  5579652 tcgacaccgataaaattttgagaaaatgacatagttcaatgtagtcacaagtg 5579704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 175
Target Start/End: Complemental strand, 5635940 - 5635903
Alignment:
Q  138 ataaaattttaagaaaatgacataattcaatgtaatca 175  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  5635940 ataaaattttaagaaaatgacataattcaatataatca 5635903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 168
Target Start/End: Complemental strand, 23130902 - 23130857
Alignment:
Q  123 gacacatcgacgccgataaaattttaagaaaatgacataattcaat 168  Q
    ||||| ||||||||| ||| ||||||||||||||||||||||||||    
T  23130902 gacacgtcgacgccggtaatattttaagaaaatgacataattcaat 23130857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 29959180 - 29959217
Alignment:
Q  136 cgataaaattttaagaaaatgacataattcaatgtaat 173  Q
    |||||||||||| |||||||||||||||||||||||||    
T  29959180 cgataaaattttgagaaaatgacataattcaatgtaat 29959217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 177
Target Start/End: Original strand, 34625692 - 34625780
Alignment:
Q  89 aaaactatgaagcacggacaccagacacaaaacggacacatcgacgccgataaaattttaagaaaatgacataattcaatgtaatcaca 177  Q
    |||||||||||||| |||||||| |||  |||  || |||||||| ||||||| | ||| |||||||||  ||||| ||||||||||||    
T  34625692 aaaactatgaagcatggacaccaaacatgaaattgatacatcgacaccgataataatttgagaaaatgaattaattgaatgtaatcaca 34625780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 178
Target Start/End: Original strand, 1334653 - 1334708
Alignment:
Q  123 gacacatcgacgccgataaaattttaagaaaatgacataattcaatgtaatcacaa 178  Q
    ||||||| ||| | ||||||||||| | |||| |||||||||||||||||||||||    
T  1334653 gacacattgacacggataaaattttgaaaaaaggacataattcaatgtaatcacaa 1334708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 177
Target Start/End: Original strand, 14514795 - 14514834
Alignment:
Q  138 ataaaattttaagaaaatgacataattcaatgtaatcaca 177  Q
    |||||||||||| ||||||| |||||||||||||||||||    
T  14514795 ataaaattttaaaaaaatgatataattcaatgtaatcaca 14514834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 177
Target Start/End: Complemental strand, 3449930 - 3449888
Alignment:
Q  135 ccgataaaattttaagaaaatgacataattcaatgtaatcaca 177  Q
    ||||||||||||||||  ||||||||||||||||| |||||||    
T  3449930 ccgataaaattttaagccaatgacataattcaatgcaatcaca 3449888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 181
Target Start/End: Original strand, 22745950 - 22746007
Alignment:
Q  123 gacacatcgacgccgataaaattttaagaaaatgacataattcaatgtaatcacaagtg 181  Q
    ||||||||||| | ||||||||||| ||||||||  ||| |||||||||||||||||||    
T  22745950 gacacatcgacac-gataaaattttgagaaaatgttatatttcaatgtaatcacaagtg 22746007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 785509 - 785464
Alignment:
Q  137 gataaaattttaagaa-aatgacataattcaatgtaatcacaagtg 181  Q
    ||||||||||| | || |||||||||||||||||||||||||||||    
T  785509 gataaaattttcaaaataatgacataattcaatgtaatcacaagtg 785464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 31327824 - 31327865
Alignment:
Q  140 aaaattttaagaaaatgacataattcaatgtaatcacaagtg 181  Q
    |||||||||||||||| |||||||| |||| |||||||||||    
T  31327824 aaaattttaagaaaattacataatttaatgcaatcacaagtg 31327865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 177
Target Start/End: Complemental strand, 34868223 - 34868170
Alignment:
Q  124 acacatcgacgccgataaaattttaagaaaatgacataattcaatgtaatcaca 177  Q
    |||| ||||| ||||||||||||| ||| |||  ||||||||||||||||||||    
T  34868223 acacgtcgacaccgataaaattttgagagaatatcataattcaatgtaatcaca 34868170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 7377953 - 7378021
Alignment:
Q  105 gacaccagacacaaaacggacacatcgacgccgataaaattttaagaaaatgacataattcaatgtaat 173  Q
    |||||| ||||||| || |||||  |||| ||| ||||| ||| ||||||| |||||||||||||||||    
T  7377953 gacaccggacacaacacagacaccccgacaccgctaaaaatttgagaaaatcacataattcaatgtaat 7378021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 177
Target Start/End: Original strand, 10158002 - 10158030
Alignment:
Q  149 agaaaatgacataattcaatgtaatcaca 177  Q
    |||||||||||||||||||||||||||||    
T  10158002 agaaaatgacataattcaatgtaatcaca 10158030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 26915310 - 26915249
Alignment:
Q  120 acggacacatcgacgccgataaaattttaagaaaatgacataattcaatgtaatcacaagtg 181  Q
    |||||||| ||||| | ||||||||||| |||||||||||||||| ||||||||||||||||    
T  26915310 acggacacgtcgacacggataaaattttgagaaaatgacataatttaatgtaatcacaagtg 26915249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 181
Target Start/End: Original strand, 42874511 - 42874572
Alignment:
Q  120 acggacacatcgacgccgataaaattttaagaaaatgacataattcaatgtaatcacaagtg 181  Q
    |||||||| ||||| ||| ||| ||||| |||||||||||||||||||||||||||||||||    
T  42874511 acggacacgtcgacaccgttaacattttgagaaaatgacataattcaatgtaatcacaagtg 42874572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 22600521 - 22600581
Alignment:
Q  123 gacacatcgacgccgataaaattttaagaaaatgacataattcaatgtaatcacaagtgcc 183  Q
    |||||||| || || ||||||||| ||||||||||||||||||||| ||||||||||||||    
T  22600521 gacacatcaacaccaataaaatttaaagaaaatgacataattcaatataatcacaagtgcc 22600581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 181
Target Start/End: Original strand, 27733851 - 27733897
Alignment:
Q  135 ccgataaaattttaagaaaatgacataattcaatgtaatcacaagtg 181  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||    
T  27733851 ccgataaaattttgagaaaatgatataattcaatgtaatcacaagtg 27733897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 31119097 - 31119137
Alignment:
Q  141 aaattttaagaaaatgacataattcaatgtaatcacaagtg 181  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  31119097 aaattttgagaaaatgacataattcaatgtaatcacaagtg 31119137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 181
Target Start/End: Original strand, 2652328 - 2652388
Alignment:
Q  120 acggacacatcgacgccgataaaattttaagaaaatgacataattcaatgtaatcacaagtg 181  Q
    ||||| |||||||| | |||||| |||| |||||||||||||||| ||||||||||||||||    
T  2652328 acggatacatcgaccctgataaattttttagaaaatgacataatt-aatgtaatcacaagtg 2652388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 181
Target Start/End: Complemental strand, 34074038 - 34073987
Alignment:
Q  130 cgacgccgataaaattttaagaaaatgacataattcaatgtaatcacaagtg 181  Q
    |||| ||||||||||||| | |||||||||||||| |||||||||| |||||    
T  34074038 cgacaccgataaaattttgaaaaaatgacataatttaatgtaatcataagtg 34073987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 174
Target Start/End: Complemental strand, 6960729 - 6960692
Alignment:
Q  137 gataaaattttaagaaaatgacataattcaatgtaatc 174  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  6960729 gataaaattttgagaaaatgacataatttaatgtaatc 6960692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 24295191 - 24295146
Alignment:
Q  136 cgataaaattttaagaaaatgacataattcaatgtaatcacaagtg 181  Q
    |||||||||| | ||||||||||| |||| ||||||||||||||||    
T  24295191 cgataaaattgtgagaaaatgacacaatttaatgtaatcacaagtg 24295146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 10497869 - 10497825
Alignment:
Q  137 gataaaattttaagaaaatgacataattcaatgtaatcacaagtg 181  Q
    ||||||||||| ||||||| ||||||||  |||||||||||||||    
T  10497869 gataaaattttgagaaaataacataatttgatgtaatcacaagtg 10497825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 32691757 - 32691789
Alignment:
Q  145 tttaagaaaatgacataattcaatgtaatcaca 177  Q
    |||||||||||||||||||| ||||||||||||    
T  32691757 tttaagaaaatgacataattgaatgtaatcaca 32691789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 181
Target Start/End: Original strand, 13307883 - 13307927
Alignment:
Q  137 gataaaattttaagaaaatgacataattcaatgtaatcacaagtg 181  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  13307883 gataaaattttgagaaaatgacataattcaatgtaatcacaagtg 13307927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 181
Target Start/End: Original strand, 44362670 - 44362716
Alignment:
Q  135 ccgataaaattttaagaaaatgacataattcaatgtaatcacaagtg 181  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||    
T  44362670 ccgataaaattttgagaaaatgacataatttaatgtaatcacaagtg 44362716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 175
Target Start/End: Complemental strand, 34589776 - 34589721
Alignment:
Q  120 acggacacatcgacgccgataaaattttaagaaaatgacataattcaatgtaatca 175  Q
    |||||||||| ||| ||||||| | ||| |||||||||||||||||||||||||||    
T  34589776 acggacacattgacaccgataacaatttgagaaaatgacataattcaatgtaatca 34589721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 135 - 181
Target Start/End: Original strand, 37496708 - 37496754
Alignment:
Q  135 ccgataaaattttaagaaaatgacataattcaatgtaatcacaagtg 181  Q
    |||||||  |||| |||||||||||||||||||||||||||||||||    
T  37496708 ccgataattttttgagaaaatgacataattcaatgtaatcacaagtg 37496754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 101 - 175
Target Start/End: Original strand, 56049847 - 56049920
Alignment:
Q  101 cacggacaccagacacaaaacggacacatcgacgccgataaaattttaagaaaatgacataattcaatgtaatca 175  Q
    |||||||||| ||||| | |||||||||||||| ||||||| | ||| || |||||||||| |||||||||||||    
T  56049847 cacggacaccggacacgacacggacacatcgacaccgataataatttgag-aaatgacatagttcaatgtaatca 56049920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 177
Target Start/End: Original strand, 9298943 - 9298979
Alignment:
Q  141 aaattttaagaaaatgacataattcaatgtaatcaca 177  Q
    |||||||||||||||||||||||||||||| ||||||    
T  9298943 aaattttaagaaaatgacataattcaatgtcatcaca 9298979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 181
Target Start/End: Original strand, 13117436 - 13117479
Alignment:
Q  138 ataaaattttaagaaaatgacataattcaatgtaatcacaagtg 181  Q
    |||||||||  ||||||||||| |||||||||||||||||||||    
T  13117436 ataaaatttggagaaaatgacaaaattcaatgtaatcacaagtg 13117479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 177
Target Start/End: Complemental strand, 22799941 - 22799906
Alignment:
Q  142 aattttaagaaaatgacataattcaatgtaatcaca 177  Q
    |||||| |||||||||||||||||||||||||||||    
T  22799941 aatttttagaaaatgacataattcaatgtaatcaca 22799906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 172
Target Start/End: Original strand, 28663498 - 28663533
Alignment:
Q  137 gataaaattttaagaaaatgacataattcaatgtaa 172  Q
    ||||||||||| ||||||||||||||||||||||||    
T  28663498 gataaaattttgagaaaatgacataattcaatgtaa 28663533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 181
Target Start/End: Complemental strand, 10164893 - 10164863
Alignment:
Q  151 aaaatgacataattcaatgtaatcacaagtg 181  Q
    |||||||||||||||||||||||||||||||    
T  10164893 aaaatgacataattcaatgtaatcacaagtg 10164863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 178
Target Start/End: Original strand, 10634996 - 10635037
Alignment:
Q  137 gataaaattttaagaaaatgacataattcaatgtaatcacaa 178  Q
    ||||||||||| | |||||||||||||||||||| |||||||    
T  10634996 gataaaattttgaaaaaatgacataattcaatgttatcacaa 10635037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 181
Target Start/End: Original strand, 5998791 - 5998867
Alignment:
Q  105 gacaccagacacaaaacggacacatcgacgccgataaaattttaagaaaatgacataattcaatgtaatcacaagtg 181  Q
    |||||||||||| | || ||||  ||||||||  |||||||  |||||||| ||||||||||||| ||||| |||||    
T  5998791 gacaccagacacgacactgacatgtcgacgccagtaaaattccaagaaaataacataattcaatgcaatcataagtg 5998867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 177
Target Start/End: Original strand, 9298809 - 9298845
Alignment:
Q  141 aaattttaagaaaatgacataattcaatgtaatcaca 177  Q
    ||||||||||||||| |||||||||||||| ||||||    
T  9298809 aaattttaagaaaataacataattcaatgtcatcaca 9298845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 181
Target Start/End: Original strand, 13484030 - 13484074
Alignment:
Q  138 ataaaattttaagaaaatgacataattc-aatgtaatcacaagtg 181  Q
    |||||||||| ||||||| ||||||||| ||||||||||||||||    
T  13484030 ataaaattttgagaaaataacataattcaaatgtaatcacaagtg 13484074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 18513296 - 18513256
Alignment:
Q  135 ccgataaaattttaagaaaatgacataattcaatgtaatca 175  Q
    ||||||| | ||| |||||||||||||||||||||||||||    
T  18513296 ccgataataatttgagaaaatgacataattcaatgtaatca 18513256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 180
Target Start/End: Complemental strand, 30080554 - 30080511
Alignment:
Q  137 gataaaattttaagaaaatgacataattcaatgtaatcacaagt 180  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  30080554 gataaaattttgagaaaatgacataattcaatgtaatcacaagt 30080511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 181
Target Start/End: Complemental strand, 21320013 - 21319954
Alignment:
Q  122 ggacacatcgacgccgataaaattttaagaaaatgacataattcaatgtaatcacaagtg 181  Q
    |||||||| ||| | ||||||||||| | ||||||| |||||||||||||||||||||||    
T  21320013 ggacacattgacacggataaaattttgaaaaaatgatataattcaatgtaatcacaagtg 21319954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 15294931 - 15294984
Alignment:
Q  131 gacgccgataaaattttaagaaaatgacataattcaatgtaatcacaagtgccg 184  Q
    ||||||||| | ||||| | ||||||||||||||||| ||||||||||||||||    
T  15294931 gacgccgatgatattttgaaaaaatgacataattcaaggtaatcacaagtgccg 15294984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 38784799 - 38784856
Alignment:
Q  124 acacatcgacgccgataaaattttaagaaaatgacataattcaatgtaatcacaagtg 181  Q
    |||||||| | ||||||||||| | | ||||||| |||||||||||||||||||||||    
T  38784799 acacatcggcaccgataaaattgtgaaaaaatgatataattcaatgtaatcacaagtg 38784856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 26205815 - 26205775
Alignment:
Q  135 ccgataaaattttaagaaaatgacataattcaatgtaatca 175  Q
    ||||||||||||| |||||||||||||||||| ||||||||    
T  26205815 ccgataaaattttgagaaaatgacataattcagtgtaatca 26205775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 181
Target Start/End: Complemental strand, 19167632 - 19167585
Alignment:
Q  135 ccgataaaatttt-aagaaaatgacataattcaatgtaatcacaagtg 181  Q
    ||||||||||||| || ||||||||| |||||||||||||||||||||    
T  19167632 ccgataaaattttgaaaaaaatgacacaattcaatgtaatcacaagtg 19167585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 177
Target Start/End: Original strand, 42192283 - 42192322
Alignment:
Q  138 ataaaattttaagaaaatgacataattcaatgtaatcaca 177  Q
    |||||||||| ||| |||||||||||||||||||||||||    
T  42192283 ataaaattttgagacaatgacataattcaatgtaatcaca 42192322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 175
Target Start/End: Complemental strand, 2039926 - 2039864
Alignment:
Q  113 acacaaaacggacacatcgacgccgataaaattttaagaaaatgacataattcaatgtaatca 175  Q
    |||||| |||||||| ||||| ||| ||| | ||| |||||||||||| ||||||||||||||    
T  2039926 acacaacacggacacgtcgacaccggtaataatttgagaaaatgacatgattcaatgtaatca 2039864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 180
Target Start/End: Complemental strand, 7621303 - 7621245
Alignment:
Q  122 ggacacatcgacgccgataaaattttaagaaaatgacataattcaatgtaatcacaagt 180  Q
    |||||| ||||| | |||||||||| || ||| |||||||||| |||||||||||||||    
T  7621303 ggacacgtcgacacagataaaatttaaaaaaattgacataatttaatgtaatcacaagt 7621245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 175
Target Start/End: Complemental strand, 11596540 - 11596470
Alignment:
Q  105 gacaccagacacaaaacggacacatcgacgccgataaaattttaagaaaatgacataattcaatgtaatca 175  Q
    |||||||||||||  ||  |||| ||||  ||||||| | ||| |||||||||||||||||||||||||||    
T  11596540 gacaccagacacagcacaaacacgtcgataccgataataatttgagaaaatgacataattcaatgtaatca 11596470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 181
Target Start/End: Complemental strand, 16207641 - 16207600
Alignment:
Q  140 aaaattttaagaaaatgacataattcaatgtaatcacaagtg 181  Q
    |||||||  ||||| |||||||||||||||||||||||||||    
T  16207641 aaaatttagagaaattgacataattcaatgtaatcacaagtg 16207600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 163
Target Start/End: Original strand, 309150 - 309190
Alignment:
Q  123 gacacatcgacgccgataaaattttaagaaaatgacataat 163  Q
    ||||| ||||| ||||||||||||| |||||||||||||||    
T  309150 gacacgtcgacaccgataaaattttgagaaaatgacataat 309190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 645346 - 645378
Alignment:
Q  145 tttaagaaaatgacataattcaatgtaatcaca 177  Q
    |||||||||||||||||||| ||||||||||||    
T  645346 tttaagaaaatgacataattgaatgtaatcaca 645378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 177
Target Start/End: Original strand, 10009844 - 10009872
Alignment:
Q  149 agaaaatgacataattcaatgtaatcaca 177  Q
    |||||||||||||||||||||||||||||    
T  10009844 agaaaatgacataattcaatgtaatcaca 10009872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 173
Target Start/End: Original strand, 38866444 - 38866496
Alignment:
Q  122 ggacacatcgacgccgataaaatttt-aagaaaatgacataattcaatgtaat 173  Q
    |||||| ||||| ||||||| ||||| || |||||||||||||||||||||||    
T  38866444 ggacacgtcgacaccgataatattttgaaaaaaatgacataattcaatgtaat 38866496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 43208341 - 43208289
Alignment:
Q  123 gacacatcgacgccgataaaattttaagaaaatgacataattcaatgtaatca 175  Q
    |||||||| || ||||||  | ||| |||||||||||||||||||||||||||    
T  43208341 gacacatcaacaccgatagtaatttgagaaaatgacataattcaatgtaatca 43208289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 8953 - 8998
Alignment:
Q  136 cgataaaattttaagaaaatgacataattcaatgtaatcacaagtg 181  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||    
T  8953 cgataaaattttgagaaaatgacataattcaacgtaatcacaagtg 8998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 175
Target Start/End: Original strand, 19637759 - 19637812
Alignment:
Q  122 ggacacatcgacgccgataaaattttaagaaaatgacataattcaatgtaatca 175  Q
    |||||||||||| ||||||| | |||||||||||||||| ||||||||||||||    
T  19637759 ggacacatcgacaccgataataatttaagaaaatgacattattcaatgtaatca 19637812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 175
Target Start/End: Original strand, 50233411 - 50233445
Alignment:
Q  141 aaattttaagaaaatgacataattcaatgtaatca 175  Q
    |||||||||||||||||||||||||||||||||||    
T  50233411 aaattttaagaaaatgacataattcaatgtaatca 50233445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 14332407 - 14332454
Alignment:
Q  129 tcgacgccgataaaattttaagaaaatgacataattcaatgtaatcaca 177  Q
    ||||| |||||||||||| | ||||||||||||||||||||||||||||    
T  14332407 tcgacaccgataaaatttga-gaaaatgacataattcaatgtaatcaca 14332454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 18946083 - 18946043
Alignment:
Q  141 aaattttaagaaaatgacataattcaatgtaatcacaagtg 181  Q
    ||||||| |||||||||||||||||||||||||||| ||||    
T  18946083 aaattttgagaaaatgacataattcaatgtaatcacgagtg 18946043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 180
Target Start/End: Complemental strand, 24462319 - 24462280
Alignment:
Q  141 aaattttaagaaaatgacataattcaatgtaatcacaagt 180  Q
    ||||||| | ||||||||||||||||||||||||||||||    
T  24462319 aaattttgaaaaaatgacataattcaatgtaatcacaagt 24462280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 177
Target Start/End: Original strand, 40176590 - 40176649
Alignment:
Q  118 aaacggacacatcgacgccgataaaattttaagaaaatgacataattcaatgtaatcaca 177  Q
    |||| ||||| || || ||||||||||||| |||||||||| | ||||||||||||||||    
T  40176590 aaaccgacacgtcaacaccgataaaattttgagaaaatgacttcattcaatgtaatcaca 40176649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 181
Target Start/End: Complemental strand, 40686825 - 40686767
Alignment:
Q  123 gacacatcgacgccgataaaattttaagaaaatgacataattcaatgtaatcacaagtg 181  Q
    ||||| |||||  |||||||||||| | ||||||| ||||||||||||||||| |||||    
T  40686825 gacacgtcgacatcgataaaattttgataaaatgatataattcaatgtaatcataagtg 40686767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 181
Target Start/End: Complemental strand, 7988517 - 7988460
Alignment:
Q  124 acacatcgacgccgataaaattttaagaaaatgacataattcaatgtaatcacaagtg 181  Q
    |||| ||||| | ||||| | ||||||||| ||||||||||||||||||||| |||||    
T  7988517 acacgtcgacactgataataatttaagaaagtgacataattcaatgtaatcataagtg 7988460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 49179776 - 49179724
Alignment:
Q  129 tcgacgccgataaaattttaagaaaatgacataattcaatgtaatcacaagtg 181  Q
    ||||| ||||||||||||| ||||| ||||||||||| |||||||||||||||    
T  49179776 tcgacaccgataaaattttgagaaagtgacataattcgatgtaatcacaagtg 49179724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 178
Target Start/End: Complemental strand, 14338537 - 14338495
Alignment:
Q  136 cgataaaattttaagaaaatgacataattcaatgtaatcacaa 178  Q
    |||||||||||| | ||||||||||||||||||||||||||||    
T  14338537 cgataaaattttgaaaaaatgacataattcaatgtaatcacaa 14338495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 24399707 - 24399660
Alignment:
Q  126 acatcgacgccgataaaattttaagaaaatgacataattcaatgtaat 173  Q
    |||||||||| |||||| |||| ||| |||||||||||||||||||||    
T  24399707 acatcgacgctgataaatttttgagacaatgacataattcaatgtaat 24399660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 177
Target Start/End: Complemental strand, 52558182 - 52558141
Alignment:
Q  136 cgataaaattttaagaaaatgacataattcaatgtaatcaca 177  Q
    |||||||| ||| |||||| ||||||||||||||||||||||    
T  52558182 cgataaaaatttgagaaaaggacataattcaatgtaatcaca 52558141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 177
Target Start/End: Complemental strand, 34409383 - 34409355
Alignment:
Q  149 agaaaatgacataattcaatgtaatcaca 177  Q
    |||||||||||||||||||||||||||||    
T  34409383 agaaaatgacataattcaatgtaatcaca 34409355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 42076807 - 42076759
Alignment:
Q  132 acgccgataaaattttaagaaaatgacataattcaatgtaatcacaagt 180  Q
    |||| ||||||||| |  ||||||||| |||||||||||||||||||||    
T  42076807 acgctgataaaattgtgggaaaatgacctaattcaatgtaatcacaagt 42076759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 8750 - 8706
Alignment:
Q  137 gataaaattttaagaaaatgacataattcaatgtaatcacaagtg 181  Q
    ||||||||||| |||||||||||| ||||||||||| ||||||||    
T  8750 gataaaattttgagaaaatgacatgattcaatgtaaccacaagtg 8706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 231
Target Start/End: Complemental strand, 10297 - 10252
Alignment:
Q  186 cgtgtcggacgtcaggacgcaccttcaatcagaaatgtctgtgcaa 231  Q
    ||||||||||  |||||| ||||||||||||||| |||||||||||    
T  10297 cgtgtcggacagcaggacacaccttcaatcagaagtgtctgtgcaa 10252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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