View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3781_high_37 (Length: 243)
Name: NF3781_high_37
Description: NF3781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3781_high_37 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 34543654 - 34543429
Alignment:
| Q |
18 |
atcagtatcaccctatcataaaggaccatgatcagatatattccctaattaagcaaagttcgtcaaatgcttctttatgttttgtttattaagttttaat |
117 |
Q |
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| T |
34543654 |
atcagtatcaccctatcataaaggacaatgatcatatatattccctaatcaagcaaagttcgtcaaatgcttctttatgttttgtttattaagttttaat |
34543555 |
T |
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| Q |
118 |
tttgagtgaattttctccaactattattgttccccctatgcctnnnnnnnttctattattccccctacactaccgtaatgcttacaatattatattattc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34543554 |
tttgagtgaattttctccaactattattgttccccctatgcctcaaaaaattctattattccccctacactaccgtaatgcttacaatattatattattc |
34543455 |
T |
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| Q |
218 |
cttatgaaaataatattgaggaaatc |
243 |
Q |
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|||||||||||||||||||||||||| |
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| T |
34543454 |
cttatgaaaataatattgaggaaatc |
34543429 |
T |
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