View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3781_high_4 (Length: 490)

Name: NF3781_high_4
Description: NF3781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3781_high_4
NF3781_high_4
[»] chr7 (1 HSPs)
chr7 (11-474)||(49008455-49008918)
[»] chr8 (8 HSPs)
chr8 (73-254)||(8945531-8945712)
chr8 (45-242)||(8958330-8958527)
chr8 (57-242)||(8974752-8974937)
chr8 (339-397)||(9947862-9947920)
chr8 (355-412)||(8958637-8958694)
chr8 (43-157)||(8963342-8963456)
chr8 (285-397)||(8945391-8945503)
chr8 (357-397)||(8975049-8975089)
[»] chr1 (2 HSPs)
chr1 (43-254)||(34962314-34962525)
chr1 (368-412)||(25927947-25927991)
[»] chr2 (1 HSPs)
chr2 (14-242)||(21686706-21686934)


Alignment Details
Target: chr7 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 11 - 474
Target Start/End: Original strand, 49008455 - 49008918
Alignment:
Q  11 cacagacattggtaatggttacagaccagcttcacctttagctttgggagccggacatatcaatcccaatagagcacttgatcctggacttgtttatgat 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49008455 cacagacattggtaatggttacagaccagcttcacctttagctttgggagccggacatatcaatcccaatagagcacttgatcctggacttgtttatgat 49008554  T
Q  111 gcaggaaaacaagattatgtgaatcttctatgtgcattaaacttcactcagaagaatatcgcgcccatcacgagatcgtcttttaacaattgttctgacc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||    
T  49008555 gcaggaaaacaagattatgtgaatcttctatgtgcattaaacttcactcagaagaatatcgcagccatcacgagatcgtcttttaacaattgttctaacc 49008654  T
Q  211 cttctttggaccttaattacccttcttttatttcctttttcaataatgctagtgttaaatcaaaggtgattacacaagaatttcaaagaacagtaaccaa 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49008655 cttctttggaccttaattacccttcttttatttcctttttcaataatgctagtgttaaatcaaaggtgattacacaagaatttcaaagaacagtaaccaa 49008754  T
Q  311 tgttggagaggaaccaaccatctacgtagccaacattacacctattgaagggttccatgttagtgttatcccaaacaagttggtgtttaaggagaaaaat 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49008755 tgttggagaggaaccaaccatctacgtagccaacattacacctattgaagggttccatgttagtgttatcccaaacaagttggtgtttaaggagaaaaat 49008854  T
Q  411 gaaaaggtggcatacaagttgaggatagaaggtcccaaaatggaggaaaataaagtagtttttg 474  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49008855 gaaaaggtggcatacaagttgaggatagaaggtcccaaaatggaggaaaataaagtagtttttg 49008918  T

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Target: chr8 (Bit Score: 54; Significance: 8e-22; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 73 - 254
Target Start/End: Complemental strand, 8945712 - 8945531
Alignment:
Q  73 atcccaatagagcacttgatcctggacttgtttatgatgcaggaaaacaagattatgtgaatcttctatgtgcattaaacttcactcagaagaatatcgc 172  Q
    ||||||||||||||||||| ||||| |||||||||||||  ||   |||||||||||| |||||||| |||||| | |||||||| || || || ||| |    
T  8945712 atcccaatagagcacttgaccctggtcttgtttatgatgttggtgtacaagattatgttaatcttctttgtgcacttaacttcacacaaaaaaacatcac 8945613  T
Q  173 gcccatcacgagatcgtcttttaacaattgttctgacccttctttggaccttaattacccttcttttatttcctttttcaat 254  Q
      | || || ||||| ||||| ||  |||||||| | ||||| ||||| ||||||||||||||||||||  | |||||||||    
T  8945612 tacgattacaagatcctctttcaatgattgttctaaaccttccttggatcttaattacccttcttttatagcttttttcaat 8945531  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 45 - 242
Target Start/End: Original strand, 8958330 - 8958527
Alignment:
Q  45 cctttagctttgggagccggacatatcaatcccaatagagcacttgatcctggacttgtttatgatgcaggaaaacaagattatgtgaatcttctatgtg 144  Q
    ||||| || |||||||| || ||| | ||||| |||||||||||||| ||||| ||| |||||||||  ||   |||||||||||| |||||||| ||||    
T  8958330 ccttttgcattgggagctggtcatgttaatccaaatagagcacttgaccctggtcttatttatgatgttggtgtacaagattatgttaatcttctttgtg 8958429  T
Q  145 cattaaacttcactcagaagaatatcgcgcccatcacgagatcgtcttttaacaattgttctgacccttctttggaccttaattacccttcttttatt 242  Q
    || | | || | | || || || ||| |  ||||||| ||||| ||||  ||  |||| ||||| ||||||||||| ||||| |||||||||||||||    
T  8958430 cacttagctactcacaaaaaaacatcactgccatcacaagatcttcttcgaatgattgctctgaaccttctttggatcttaactacccttcttttatt 8958527  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 242
Target Start/End: Original strand, 8974752 - 8974937
Alignment:
Q  57 ggagccggacatatcaatcccaatagagcacttgatcctggacttgtttatgatgcaggaaaacaagattatgtgaatcttctatgtgcattaaacttca 156  Q
    ||||| || |||||||| ||||| | ||||||| | |||||||||||||||||||  ||   |||||||||||| |||||||| |||||| | |||||||    
T  8974752 ggagctggtcatatcaaccccaacaaagcacttaaccctggacttgtttatgatgttggtgtacaagattatgtcaatcttctttgtgcactcaacttca 8974851  T
Q  157 ctcagaagaatatcgcgcccatcacgagatcgtcttttaacaattgttctgacccttctttggaccttaattacccttcttttatt 242  Q
    | || || || ||| |   ||| || ||||| |||  |||  |||||||| | ||||| ||||| || ||||||||||||||||||    
T  8974852 cacaaaaaaacatcactatcattacaagatcttctactaatgattgttctaaaccttcgttggatctcaattacccttcttttatt 8974937  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 339 - 397
Target Start/End: Complemental strand, 9947920 - 9947862
Alignment:
Q  339 gccaacattacacctattgaagggttccatgttagtgttatcccaaacaagttggtgtt 397  Q
    ||||||||||| |||||  ||||||| ||||| ||||||||||||||||||||||||||    
T  9947920 gccaacattactcctatcaaagggtttcatgtcagtgttatcccaaacaagttggtgtt 9947862  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 355 - 412
Target Start/End: Original strand, 8958637 - 8958694
Alignment:
Q  355 ttgaagggttccatgttagtgttatcccaaacaagttggtgtttaaggagaaaaatga 412  Q
    |||||||||||||||| ||||||||||||||||||||||| || || ||||| |||||    
T  8958637 ttgaagggttccatgtcagtgttatcccaaacaagttggtattcaatgagaagaatga 8958694  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 157
Target Start/End: Original strand, 8963342 - 8963456
Alignment:
Q  43 cacctttagctttgggagccggacatatcaatcccaatagagcacttgatcctggacttgtttatgatgcaggaaaacaagattatgtgaatcttctatg 142  Q
    ||||||| || |||||||| || |||||||| || |||| ||||||||| ||||| ||||||||||||   ||   |||||||||||| ||| |||| ||    
T  8963342 caccttttgcattgggagctggtcatatcaaccctaataaagcacttgaccctggtcttgtttatgatattggtgtacaagattatgttaattttctttg 8963441  T
Q  143 tgcattaaacttcac 157  Q
    |||| | ||||||||    
T  8963442 tgcacttaacttcac 8963456  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 285 - 397
Target Start/End: Complemental strand, 8945503 - 8945391
Alignment:
Q  285 caagaatttcaaagaacagtaaccaatgttggagaggaaccaaccatctacgtagccaacattacacctattgaagggttccatgttagtgttatcccaa 384  Q
    ||||||||||| |||||||| ||||||||||| |||| || | |||| || || || | |||||  ||| ||||||| | || |||||||| ||||||||    
T  8945503 caagaatttcacagaacagttaccaatgttggtgagggacaagccatttatgttgctagcattatgcctgttgaaggataccgtgttagtgctatcccaa 8945404  T
Q  385 acaagttggtgtt 397  Q
    | |||||| ||||    
T  8945403 ataagttgatgtt 8945391  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 397
Target Start/End: Original strand, 8975049 - 8975089
Alignment:
Q  357 gaagggttccatgttagtgttatcccaaacaagttggtgtt 397  Q
    ||||||||||||||||| ||||||||||| |||||||||||    
T  8975049 gaagggttccatgttagagttatcccaaataagttggtgtt 8975089  T

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Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 43 - 254
Target Start/End: Complemental strand, 34962525 - 34962314
Alignment:
Q  43 cacctttagctttgggagccggacatatcaatcccaatagagcacttgatcctggacttgtttatgatgcaggaaaacaagattatgtgaatcttctatg 142  Q
    ||||||| || |||||||| || ||| | ||||| |||||||||||||| ||||| |||||||||||||  ||   ||||||||||||||||||||| ||    
T  34962525 caccttttgcattgggagctggtcatgttaatcctaatagagcacttgaccctggtcttgtttatgatgttggtgtacaagattatgtgaatcttctttg 34962426  T
Q  143 tgcattaaacttcactcagaagaatatcgcgcccatcacgagatcgtcttttaacaattgttctgacccttctttggaccttaattacccttcttttatt 242  Q
    |||| | || | | | || || || ||| |  ||||||| ||||| ||||  ||  |||||||| | ||||| ||||| ||||| |||||||||||||||    
T  34962425 tgcacttaaatactcacaaaaaaacatcactaccatcacaagatcctcttccaatgattgttctaaaccttccttggatcttaactacccttcttttatt 34962326  T
Q  243 tcctttttcaat 254  Q
     | |||||||||    
T  34962325 gcttttttcaat 34962314  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 412
Target Start/End: Complemental strand, 25927991 - 25927947
Alignment:
Q  368 tgttagtgttatcccaaacaagttggtgtttaaggagaaaaatga 412  Q
    |||||||||||||||||||||||| |||||||| ||||| |||||    
T  25927991 tgttagtgttatcccaaacaagttagtgtttaatgagaagaatga 25927947  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 14 - 242
Target Start/End: Complemental strand, 21686934 - 21686706
Alignment:
Q  14 agacattggtaatggttacagaccagcttcacctttagctttgggagccggacatatcaatcccaatagagcacttgatcctggacttgtttatgatgca 113  Q
    ||||||||| |||||| ||||| ||||  | ||||| || |||||||| || ||||| || || |||||||||||||||||||| ||||||||||||       
T  21686934 agacattggaaatggtaacagagcagcaactccttttgcattgggagctggtcatattaaccctaatagagcacttgatcctggtcttgtttatgatatc 21686835  T
Q  114 ggaaaacaagattatgtgaatcttctatgtgcattaaacttcactcagaagaatatcgcgcccatcacgagatcgtcttttaacaattgttctgaccctt 213  Q
    ||   |||||||||| | |||||||| |||||| | |||||||| || || || |||    |||| || ||||| ||||| ||  |||| ||| | ||||    
T  21686834 ggtgtacaagattatattaatcttctttgtgcacttaacttcacacaaaaaaacatcagtgccattacaagatcttctttcaatgattgctctaaacctt 21686735  T
Q  214 ctttggaccttaattacccttcttttatt 242  Q
    | || || ||||| |||||||||||||||    
T  21686734 ccttagatcttaactacccttcttttatt 21686706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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