View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3781_high_42 (Length: 228)
Name: NF3781_high_42
Description: NF3781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3781_high_42 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 8928188 - 8928394
Alignment:
| Q |
1 |
tattgtgcttttgtaataaaatattattcttcatgcattaaaaaatacatatataagagacagaaatgttcattaaaattaacgtaagggagtaaaacac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8928188 |
tattgtgcttttgtaataaaatattattcttcatgcattaaaaaatacatatataagagacagaaatgttcattaaaattaacgtaagggagtaaaacac |
8928287 |
T |
|
| Q |
101 |
aattacctactagaatctaacaaaagtgaagccaaaaacacagttaaaggtgtggaataccctagtggatttgacaactcttgagcatcaaatgatacat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8928288 |
aattacctactagaatctaacaaaagtgaagccaaaaacacagttaaaggtgtggaataccctagtggatttgacaactcttgagcatcaaatgatacat |
8928387 |
T |
|
| Q |
201 |
tccccta |
207 |
Q |
| |
|
||||||| |
|
|
| T |
8928388 |
tccccta |
8928394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University