View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3781_high_46 (Length: 206)
Name: NF3781_high_46
Description: NF3781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3781_high_46 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 164; Significance: 7e-88; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 45110923 - 45110748
Alignment:
| Q |
19 |
aagttccaatacacgctttgcacgaggagtaaatggaatctcaacagcaacaaatccactgccccttccaattatcttctctacttccacccgtgcatct |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45110923 |
aagttccaatacacgctttgcacgaggagtaaacggaatctcaacagcaacaaatccactaccccttccaattatcttctctacttccacccgtgcatct |
45110824 |
T |
|
| Q |
119 |
ttaaggttgattcccatagactttaaaaccttggcggcgataccagtgccttcaccaataagacccagtataatct |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
45110823 |
ttaaggttgattcccatagactttaaaaccttggcggcgataccagtgccttcaccaataagacccagtagaatct |
45110748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 47379216 - 47379051
Alignment:
| Q |
20 |
agttccaatacacgctttgcacgaggagtaaatggaatctcaacagcaacaaatccactgccccttccaattatcttctctacttccacccgtgcatctt |
119 |
Q |
| |
|
|||||||| || | ||| ||||| |||||||| |||||||||||||||||||| || || ||||||||||||||||| || |||||||| || | |||| |
|
|
| T |
47379216 |
agttccaaaactctcttggcacgcggagtaaacggaatctcaacagcaacaaaaccgctaccccttccaattatcttttcaacttccacgcgagagtctt |
47379117 |
T |
|
| Q |
120 |
taaggttgattcccatagactttaaaaccttggcggcgataccagtgccttcaccaataagaccca |
185 |
Q |
| |
|
| ||||| |||||||||||||||| |||||| || | |||||||||||||||||||||||||||| |
|
|
| T |
47379116 |
tcaggttaattcccatagactttagaaccttagcaccaataccagtgccttcaccaataagaccca |
47379051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 47814762 - 47814597
Alignment:
| Q |
20 |
agttccaatacacgctttgcacgaggagtaaatggaatctcaacagcaacaaatccactgccccttccaattatcttctctacttccacccgtgcatctt |
119 |
Q |
| |
|
|||||||| || | ||| ||||| |||||||| |||||||||||||| ||||| ||||| ||||||||||||||||| || |||||||| || | |||| |
|
|
| T |
47814762 |
agttccaaaactctcttggcacgcggagtaaacggaatctcaacagcgacaaaaccactaccccttccaattatcttttcgacttccacgcgagagtctt |
47814663 |
T |
|
| Q |
120 |
taaggttgattcccatagactttaaaaccttggcggcgataccagtgccttcaccaataagaccca |
185 |
Q |
| |
|
| ||||| |||||||||||||||| |||||| || | |||||||||||||| | ||||| ||||| |
|
|
| T |
47814662 |
tcaggttaattcccatagactttagaaccttagcaccaataccagtgccttcgcgaataataccca |
47814597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 20 - 194
Target Start/End: Complemental strand, 40242308 - 40242134
Alignment:
| Q |
20 |
agttccaatacacgctttgcacgaggagtaaatggaatctcaacagcaacaaatccactgccccttccaattatcttctctacttccacccgtgcatctt |
119 |
Q |
| |
|
|||||||| || | ||| ||||| |||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||| || || |||||||||| |
|
|
| T |
40242308 |
agttccaaaactctcttggcacgcggagtaaacggaatctcaacagcgacaaaaccactgccccttccaattatcttctctacctcgacacgtgcatctt |
40242209 |
T |
|
| Q |
120 |
taaggttgattcccatagactttaaaaccttggcggcgataccagtgccttcaccaataagacccagtataatct |
194 |
Q |
| |
|
| ||||| || ||||||||||| |||||||| || || |||||||| ||||||||||||||||||| || ||||| |
|
|
| T |
40242208 |
ttaggttaatccccatagacttcaaaaccttagccgcaataccagttccttcaccaataagacccaatagaatct |
40242134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 46 - 183
Target Start/End: Original strand, 34056994 - 34057131
Alignment:
| Q |
46 |
agtaaatggaatctcaacagcaacaaatccactgccccttccaattatcttctctacttccacccgtgcatctttaaggttgattcccatagactttaaa |
145 |
Q |
| |
|
|||||| |||||||||||||| ||||| |||| ||||||||||||||||| ||||||||||| || |||||||| | ||| ||||||||| |||||| | |
|
|
| T |
34056994 |
agtaaacggaatctcaacagcgacaaaaccaccaccccttccaattatcttttctacttccacacgcgcatctttcaagttaattcccatacactttaga |
34057093 |
T |
|
| Q |
146 |
accttggcggcgataccagtgccttcaccaataagacc |
183 |
Q |
| |
|
||||| | | |||| ||||||||||||||||||||| |
|
|
| T |
34057094 |
accttaacagaaatactagtgccttcaccaataagacc |
34057131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University