View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3781_high_9 (Length: 447)
Name: NF3781_high_9
Description: NF3781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3781_high_9 |
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| [»] chr2 (6 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 48 - 447
Target Start/End: Original strand, 13500563 - 13500965
Alignment:
| Q |
48 |
tagtacatattatcaaaattcatatcccaatgtgaataaaaaatggcccaaggacctggtattagtcatcatgttcctctaacgtgccatccaataacat |
147 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
13500563 |
tagtagatattatcaaaattcatatcccaatgtgaataaaaaatggcccaaggacctggtattagtcatcatcttcctctaacgtgccatccaataacat |
13500662 |
T |
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| Q |
148 |
cttcagttcct---ataaataccatgctgaacttcacttataaaccacagcaaggcaagcaacttcttcattatttctttcttacactagcattataatt |
244 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13500663 |
cttcagttcctcctataaataccatgctgaacttcacttataaaccacagcaaggcaagcaacttcttcattatttctttcttacactagcattataatt |
13500762 |
T |
|
| Q |
245 |
catcatgggtgtcatcaattttgaggaagaaaccacctctgttgtagctccagctacgcttcacaaagcttttgttacagatgctgataaccttatccca |
344 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
13500763 |
catcatgggtgtcatcaattttgaggaagaaaccacctctgttgtagctccagctacacttcacaaagcttttgttacagatgctgacaaccttatccca |
13500862 |
T |
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| Q |
345 |
aaggttattgatgtcatcaaaagtattgacattgttgaaggaaatggtggcgccggaaccatcaagaaactcactttcgttgaaggtcagaataaatata |
444 |
Q |
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| T |
13500863 |
aaggttattgatgtcatcaaaagtattgacattgttgaaggaaatggtggcgccggaaccatcaagaaactcactttcgttgaaggtcagtataaatata |
13500962 |
T |
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| Q |
445 |
ttt |
447 |
Q |
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||| |
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| T |
13500963 |
ttt |
13500965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 245 - 447
Target Start/End: Original strand, 13514733 - 13514935
Alignment:
| Q |
245 |
catcatgggtgtcatcaattttgaggaagaaaccacctctgttgtagctccagctacgcttcacaaagcttttgttacagatgctgataaccttatccca |
344 |
Q |
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|||||||||||| ||||||||||||| |||||||||||| ||||||||| ||||| ||| |||||||| | ||||||||| ||||||||||||||||| |
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| T |
13514733 |
catcatgggtgtgttcaattttgaggatgaaaccacctctaatgtagctcctgctacactttacaaagctctagttacagattctgataaccttatccca |
13514832 |
T |
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| Q |
345 |
aaggttattgatgtcatcaaaagtattgacattgttgaaggaaatggtggcgccggaaccatcaagaaactcactttcgttgaaggtcagaataaatata |
444 |
Q |
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|||||||||||||||||||| ||| |||| ||||||||||| || |||||||||||||||||||||||||| ||||| |||||||||| | ||||||||| |
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| T |
13514833 |
aaggttattgatgtcatcaagagtgttgaaattgttgaaggcaacggtggcgccggaaccatcaagaaacttacttttgttgaaggtcggtataaatata |
13514932 |
T |
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| Q |
445 |
ttt |
447 |
Q |
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||| |
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| T |
13514933 |
ttt |
13514935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 244 - 431
Target Start/End: Original strand, 13484055 - 13484242
Alignment:
| Q |
244 |
tcatcatgggtgtcatcaattttgaggaagaaaccacctctgttgtagctccagctacgcttcacaaagcttttgttacagatgctgataaccttatccc |
343 |
Q |
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|||||||||||||| |||| |||||||| |||||||| ||| |||||||||| |||| ||| |||||||| | ||||||||| |||||||||||||||| |
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| T |
13484055 |
tcatcatgggtgtcttcaactttgaggatgaaaccacatctattgtagctcctgctagactttacaaagctctagttacagattctgataaccttatccc |
13484154 |
T |
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| Q |
344 |
aaaggttattgatgtcatcaaaagtattgacattgttgaaggaaatggtggcgccggaaccatcaagaaactcactttcgttgaaggt |
431 |
Q |
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| T |
13484155 |
aaaggttattgatgccatccaaagtattgaaattgttgaaggaaacggtggcgccggaaccatcaaaaaacttactttcgttgaaggt |
13484242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 244 - 431
Target Start/End: Original strand, 13489780 - 13489967
Alignment:
| Q |
244 |
tcatcatgggtgtcatcaattttgaggaagaaaccacctctgttgtagctccagctacgcttcacaaagcttttgttacagatgctgataaccttatccc |
343 |
Q |
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|||||||||||||| |||| |||||||| |||||||| ||| |||||||||| |||| ||| |||||||||| ||||||||| |||||||| ||||||| |
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| T |
13489780 |
tcatcatgggtgtcttcaactttgaggatgaaaccacatctattgtagctcctgctagactttacaaagctttagttacagattctgataactttatccc |
13489879 |
T |
|
| Q |
344 |
aaaggttattgatgtcatcaaaagtattgacattgttgaaggaaatggtggcgccggaaccatcaagaaactcactttcgttgaaggt |
431 |
Q |
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|| |||||||||| |||| |||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
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| T |
13489880 |
gaatgttattgatgccatccaaagtattgaaattgttgaaggaaacggtggcgccggaaccatcaagaaacttactttcgttgaaggt |
13489967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 238 - 445
Target Start/End: Original strand, 13508474 - 13508681
Alignment:
| Q |
238 |
tataattcatcatgggtgtcatcaattttgaggaagaaaccacctctgttgtagctccagctacgcttcacaaagcttttgttacagatgctgataacct |
337 |
Q |
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|||||||||| |||||||| ||||||||||||| |||||||||||| |||||||||| ||||| ||| |||||||| ||||||| |||||||| | ||| |
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| T |
13508474 |
tataattcataatgggtgttttcaattttgaggatgaaaccacctctattgtagctcctgctacactttacaaagctcttgttacggatgctgacaccct |
13508573 |
T |
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| Q |
338 |
tatcccaaaggttattgatgtcatcaaaagtattgacattgttgaaggaaatggtggcgccggaaccatcaagaaactcactttcgttgaaggtcagaat |
437 |
Q |
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|| ||||||||||||||||| |||||| |||||||| || ||||||||||| || || |||||||||||||||||||||||||| || ||||||| | || |
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| T |
13508574 |
taccccaaaggttattgatgccatcaagagtattgatatcgttgaaggaaacggcggagccggaaccatcaagaaactcacttttgtcgaaggtcggtat |
13508673 |
T |
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| Q |
438 |
aaatatat |
445 |
Q |
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|||||||| |
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| T |
13508674 |
aaatatat |
13508681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 111
Target Start/End: Original strand, 13508280 - 13508337
Alignment:
| Q |
54 |
atattatcaaaattcatatcccaatgtgaataaaaaatggcccaaggacctggtatta |
111 |
Q |
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|||||||| ||||||| || ||||||||||||||||||||| || ||||| |||||| |
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| T |
13508280 |
atattatccaaattcacgtcacaatgtgaataaaaaatggcctaacgaccttgtatta |
13508337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 427
Target Start/End: Complemental strand, 10797599 - 10797511
Alignment:
| Q |
339 |
atcccaaaggttattgatgtcatcaaaagtattgacattgttgaaggaaatggtggcgccggaaccatcaagaaactcactttcgttga |
427 |
Q |
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|||||||| | | |||||| |||||| ||| |||| | || || ||||||||||| ||||| ||||||||||| |||||||||||||| |
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| T |
10797599 |
atcccaaaagctgttgatgccatcaagagtgttgaaaccgtcgagggaaatggtggtgccggcaccatcaagaagctcactttcgttga |
10797511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 427
Target Start/End: Complemental strand, 50079189 - 50079101
Alignment:
| Q |
339 |
atcccaaaggttattgatgtcatcaaaagtattgacattgttgaaggaaatggtggcgccggaaccatcaagaaactcactttcgttga |
427 |
Q |
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| T |
50079189 |
atcccaaaagctgttgatgccatcaagagtgttgaaaccgtcgagggaaatggtggtgccggcaccatcaagaagctcactttcgttga |
50079101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 33
Target Start/End: Original strand, 19619309 - 19619340
Alignment:
| Q |
2 |
tataattagggacggaggtagtagtacatatt |
33 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
19619309 |
tataattagggacggaggtagtagtacatatt |
19619340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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