View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3781_low_10 (Length: 437)
Name: NF3781_low_10
Description: NF3781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3781_low_10 |
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| [»] scaffold0516 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 48033934 - 48033600
Alignment:
| Q |
1 |
aaacacagcatcacatcacaatctacagttcaccatgaactcaattatgacaaaacatcatttgtttccaattcataaacaaaaactaccagcaaccaag |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
48033934 |
aaacacaacatcacatcacaatctacagttcaccatgaactcaattatgacaaaacatcatttgtttccaattcataaacaaaaactaacagcaaccaag |
48033835 |
T |
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| Q |
101 |
atctgccatcagcacatctcaagccaccgcaaattaaaactcctctgccaccgtcctcgtcgcgctacaagatgaaccgccgtcatcaccgctcagtcac |
200 |
Q |
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| T |
48033834 |
atttgccatcagcccatctcaagccaccgcaaattaaaactcctccgccaccgtcctcgtcgcgctacaacatgaaccgccatcatcaccgctcagtcac |
48033735 |
T |
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| Q |
201 |
caaccaccagatctgactaccggagacggttctcactcgttttcgcttctggcttcgtctgatttcgtttatgggtttgctactcaaatttgagattttg |
300 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48033734 |
caaccaccagatctgactaccggagacgattctcactcgttttcgcttctgggttcgtctgatttcgtttatgggtttgctactcaaatttgagattttg |
48033635 |
T |
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| Q |
301 |
tttaagatttgattttgctgcgatatgatggagaa |
335 |
Q |
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| T |
48033634 |
tttaagatttgattttgctgcgatgtgatggagaa |
48033600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0516 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: scaffold0516
Description:
Target: scaffold0516; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 63 - 330
Target Start/End: Complemental strand, 693 - 424
Alignment:
| Q |
63 |
tgtttccaattcataaacaaaaactaccagcaaccaagatctgccatcagcacatctcaagccaccgcaaattaaaactcctctgccaccgtcctcgtcg |
162 |
Q |
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| T |
693 |
tgtttccaatccataaacaaacactaacagcaaccaagatctgccatcagcccatctcaagccaccgcaatttaaaactcctcccccaccgtcctcttcg |
594 |
T |
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| Q |
163 |
cgctacaagatgaaccgccgtcatcaccgctcagtcaccaaccaccagatctgac--taccggagacggttctcactcgttttcgcttctggcttcgtct |
260 |
Q |
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| T |
593 |
cgctacaacatgaaccgccgtcatcaccgctcagtcaccaaccaccagatctgacatcaccggagacaattctcactcgttttcggttctgggttcattt |
494 |
T |
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| Q |
261 |
gatttcgtttatgggtttgctactcaaatttgagattttgtttaagatttgattttgctgcgatatgatg |
330 |
Q |
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| T |
493 |
gatttcgtttatgggtttgctactcaaattcgagattttgtttaagatttgattttgctgcgatatgatg |
424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 9774466 - 9774394
Alignment:
| Q |
1 |
aaacacagcatcacatcacaatctacagttcaccatgaactcaatt-atgacaaaacatcatttgtttccaat |
72 |
Q |
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||||||| || |||||||| ||||||| ||||| |||||||||||| ||||||| |||||||||||||||||| |
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| T |
9774466 |
aaacacaacaacacatcaccatctacaattcacaatgaactcaattcatgacaagacatcatttgtttccaat |
9774394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 168
Target Start/End: Complemental strand, 12048987 - 12048938
Alignment:
| Q |
119 |
tcaagccaccgcaaattaaaactcctctgccaccgtcctcgtcgcgctac |
168 |
Q |
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| T |
12048987 |
tcaagtcaccgcaaattaacactcatccgccatcgtcctcgtcgcgctac |
12048938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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