View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3781_low_11 (Length: 415)
Name: NF3781_low_11
Description: NF3781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3781_low_11 |
 | |
|
| [»] scaffold0130 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 377; Significance: 0; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 12 - 400
Target Start/End: Original strand, 11541559 - 11541947
Alignment:
| Q |
12 |
atcatcatatcagagtatctacatttgagtgctttttaccaacactaccaataatctgcacaggaacatccttctttttattctattcaaattgttgttc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
11541559 |
atcatcatatcagagtatctacatttgagtgctttttaccaacactaccaataatctgcacaggaacatccttcttcttattctattcaaattgttgttc |
11541658 |
T |
|
| Q |
112 |
acatatgttagttgcacattgcaatcattcagattgtacatagagataaaggtcgttatgcactataccaagaaaaagaaccttgattcattgatttcat |
211 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11541659 |
acatatgttagttgcacattgcattcattcagattgtacatagagataaaggtcgttatgcactataccaagaaaaagaaccttgattcattgatttcat |
11541758 |
T |
|
| Q |
212 |
tgaagtagcaaataaattttatgttgttcagacaggataattaaaggataaattgcacattttaaatgtacaaatggcgataatgtattcggtttattct |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11541759 |
tgaagtagcaaataaattttatgttgttcagacaggataattaaaggataaattgcacattttaaatgtacaaatggcgataatgtattcggtttattct |
11541858 |
T |
|
| Q |
312 |
acgcaaccaccaccatatttctattacgttccaattatctttggctatttagttctcaactcaattagacaagccatgatgaataagat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
11541859 |
acgcaaccaccaccatatttctattacgttccaattatctttggctatttagttctcaactcaattagacaagccatgatcaataagat |
11541947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 12 - 400
Target Start/End: Original strand, 34614105 - 34614492
Alignment:
| Q |
12 |
atcatcatatcagagtatctacatttgagtgctttttaccaacactaccaataatctgcacaggaacatccttctttttattctattcaaattgttgttc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
34614105 |
atcatcatatcagagtatctacatttgagtgctttttaccaacactaccaataatctgcacaggaacatcct-cttcttattctattcaaattgttgttc |
34614203 |
T |
|
| Q |
112 |
acatatgttagttgcacattgcaatcattcagattgtacatagagataaaggtcgttatgcactataccaagaaaaagaaccttgattcattgatttcat |
211 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
34614204 |
acatatgttagttgcacattgcattcattcagattgtacatagagataaaggtcgttatgcactataccaagaaaaagagccttgattcattgatttcat |
34614303 |
T |
|
| Q |
212 |
tgaagtagcaaataaattttatgttgttcagacaggataattaaaggataaattgcacattttaaatgtacaaatggcgataatgtattcggtttattct |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34614304 |
tgaagtagcaaataaattttatgttgttcagacaggataattaaaggataaattgcacattttaaatgtacaaatggcgataatgtattcggtttattct |
34614403 |
T |
|
| Q |
312 |
acgcaaccaccaccatatttctattacgttccaattatctttggctatttagttctcaactcaattagacaagccatgatgaataagat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
34614404 |
acgcaaccaccaccatatttctattacgttccaattttctttggctatttagttctcaactcaattagacaagccatgatcaataagat |
34614492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 23 - 158
Target Start/End: Original strand, 34742082 - 34742217
Alignment:
| Q |
23 |
agagtatctacatttgagtgctttttaccaacactaccaataatctgcacaggaacatccttctttttattctattcaaattgttgttcacatatgttag |
122 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
34742082 |
agagtatctacatttgagtactttttaccaacactaccaataatctgcacaggaacatccttcttcttattctattcaaattgttgttcacatatgttag |
34742181 |
T |
|
| Q |
123 |
ttgcacattgcaatcattcagattgtacatagagat |
158 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |
|
|
| T |
34742182 |
ttgcacattgcattcattcagattgtacatagagat |
34742217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 125 - 400
Target Start/End: Original strand, 34741062 - 34741351
Alignment:
| Q |
125 |
gcacattgcaatcattcagattgtacatagagataaaggtcgttatgcactataccaagaaaaagaaccttgattcattgatttcattgaagtagcaaat |
224 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||| |||| | ||||||||||||||| |||||| ||||||||||| ||| | |||||||||| |||| |
|
|
| T |
34741062 |
gcacattgcattatttcagattgtacatagagatagaggttgctatgcactataccaataaaaagcaccttgattca--gatctaattgaagtaggaaat |
34741159 |
T |
|
| Q |
225 |
aaattttatgttgttcagacaggataa---------------ttaaaggataaattgcacattttaaatgtacaaatg-gcgataatgtattcggtttat |
308 |
Q |
| |
|
|| |||||||||||| ||| |||| || |||||||||||||||||| |||| ||||||||| || ||| |||||||||||||||| |
|
|
| T |
34741160 |
aatttttatgttgtttagataggacaaactatgtatgcacaattaaaggataaattgcactttttgaatgtacaagtgtgcgggaatgtattcggtttat |
34741259 |
T |
|
| Q |
309 |
tctacgcaaccaccaccatatttctattacgttccaattatctttggctatttagttctcaactcaattagacaagccatgatgaataagat |
400 |
Q |
| |
|
||| | | ||||||||||||||||||| |||||||||||| |||||||||| ||||||||| |||||||||||||| ||| |||||||| |
|
|
| T |
34741260 |
tcttctatgcaaccaccatatttctattaccttccaattatctctggctatttaattctcaacttaattagacaagccacgatcaataagat |
34741351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 34740983 - 34741029
Alignment:
| Q |
20 |
atcagagtatctacatttgagtgctttttaccaacactaccaataat |
66 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
34740983 |
atcagagtaactacatttgagtactttttaccaacactacaaataat |
34741029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 236
Target Start/End: Original strand, 11547673 - 11547797
Alignment:
| Q |
119 |
ttagttgcacattgcaatcattcagattgtacatagagataaaggtcgttatgcactataccaagaaaaagaaccttgat-------tcattgatttcat |
211 |
Q |
| |
|
|||| ||||||||||| || ||| ||||||||||||||||| ||||| | ||| ||||||| |||| | | || ||||| ||||||||||||| |
|
|
| T |
11547673 |
ttagctgcacattgcattctttcggattgtacatagagatagaggtcatgatgtactatactaagagacaatacattgattcatatctcattgatttcat |
11547772 |
T |
|
| Q |
212 |
tgaagtagcaaataaattttatgtt |
236 |
Q |
| |
|
|||||||| ||| || ||||||||| |
|
|
| T |
11547773 |
tgaagtaggaaacaatttttatgtt |
11547797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 34740404 - 34740462
Alignment:
| Q |
124 |
tgcacattgcaatcattcagattgtacatagagataaaggtcgttatgcactataccaa |
182 |
Q |
| |
|
||||||||||| || ||||||||||| ||||||||| |||| |||||||||| ||||| |
|
|
| T |
34740404 |
tgcacattgcattctttcagattgtaaatagagatagaggttattatgcactagaccaa |
34740462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 34741900 - 34741954
Alignment:
| Q |
22 |
cagagtatctacatttgagtgctttttaccaacactaccaataatctgcacagga |
76 |
Q |
| |
|
||||||||||||||||||||| || || ||||||||| |||||||| ||||||| |
|
|
| T |
34741900 |
cagagtatctacatttgagtgtttgttttcaacactacgaataatctccacagga |
34741954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 34757270 - 34757324
Alignment:
| Q |
20 |
atcagagtatctacatttgagtgc-tttttaccaacactaccaataatctgcaca |
73 |
Q |
| |
|
||||||||||||||||||| | | ||||||||||||||||||||||||| |||| |
|
|
| T |
34757270 |
atcagagtatctacatttgtctacatttttaccaacactaccaataatctccaca |
34757324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0130 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0130
Description:
Target: scaffold0130; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 323
Target Start/End: Original strand, 19546 - 19619
Alignment:
| Q |
250 |
aattaaaggataaattgcacattttaaatgtacaaatggcgataatgtattcggtttattctacgcaaccacca |
323 |
Q |
| |
|
||||||||||||||||| | |||| ||||||||| | ||| |||||||| ||||||||||| |||||||||| |
|
|
| T |
19546 |
aattaaaggataaattgtatttttttaatgtacaagtagcgggaatgtatttggtttattctatgcaaccacca |
19619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University