View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3781_low_12 (Length: 405)
Name: NF3781_low_12
Description: NF3781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3781_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 17 - 387
Target Start/End: Original strand, 39979172 - 39979540
Alignment:
| Q |
17 |
cataggtacaagtatgttcaatctgtgagaaagcataggtttcgcaggaatcattttgtctaaagtgtggctatctcctcttatcctctcttcaggaaga |
116 |
Q |
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| T |
39979172 |
cataggtacaagtatgttcaatctgtgagaaagcataggtttcgcaggaatcattttgtctaaagtgtggctatctcctcttatcctctcttcaggaaga |
39979271 |
T |
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| Q |
117 |
acatgttgcaatcatacactactatgttttgtagctagctcatcagaattttcacaatttagtcgatgatggactagcatggcttcacaaatcacaatgg |
216 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39979272 |
acatgttgcaatcatacactactatgttttgtag--agctcatcagaattttcacaatttagtcgatgatggactagcatggcttcacaaatcacaatgg |
39979369 |
T |
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| Q |
217 |
cattagaaaatggcaaattcacaactttattggtttaatggcagagattacaatttactagaatgttctgttctgctcctcgctttctgggacgctaact |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39979370 |
cattagaaaatggcaaattcacaactttattggtttaatggcagagattacaatttactagaatgttctgttctgctcctcgctttctgggacgttaact |
39979469 |
T |
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| Q |
317 |
atccaatcgatttatgccactcatggaattttattcctgttctgttgtcttgtctggcgtgagtactaaat |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39979470 |
atccaatcgatttatgccactcatggaattttattcctgttctgttgtcttgtctggcgtgagtactaaat |
39979540 |
T |
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