View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3781_low_14 (Length: 376)
Name: NF3781_low_14
Description: NF3781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3781_low_14 |
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| [»] scaffold0325 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 34337495 - 34337133
Alignment:
| Q |
1 |
tatgtattgatttccagaggcctcttaaacagtaaaatatagtgtcctccattttcatatgaactaataattattctggttatagacactgaggaaggaa |
100 |
Q |
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| T |
34337495 |
tatgtattgatttccagaggcctcttaaacagtaaaatatagtttcctccattttcatatgaactaataattattctggttatagacactgaggaaggaa |
34337396 |
T |
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| Q |
101 |
gcaatctaagtacacaagatttatggaacatcactctttagctgaaaagaaaagataatatgactataccatcgaattaaagaaaataataacagtgaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34337395 |
gcaatctaagtacacaagatttatggaacatcactctttagctgaaaagaaaagataatatgactataccatcgaattaaagaaaataataacagtgaaa |
34337296 |
T |
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| Q |
201 |
tgatagataacatgtatatgatgttcctgttgaaccgtgtgcagaaagttagcattcagaagaaatatgtctatannnnnnnaatggccaataatagtag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34337295 |
tgatagataacatgtatatgatgttcctgttgaaccgtgtgcagaaagttagcattcagaagaaatatgtctatatttttttaatggccaataatagtag |
34337196 |
T |
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| Q |
301 |
ttagttgctatttttgttagagggggaagttgaacccatgaccttcttatcactctaatccct |
363 |
Q |
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| T |
34337195 |
ttagttgctatttttgttagagggggaagttgaacccatgaccttcttatcactctaatccct |
34337133 |
T |
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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 295 - 354
Target Start/End: Complemental strand, 16244683 - 16244624
Alignment:
| Q |
295 |
tagtagttagttgctatttttgttagagggggaagttgaacccatgaccttcttatcact |
354 |
Q |
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| T |
16244683 |
tagtagttagttattatttttgttagagaggggagttgaacccatgacctctttatcact |
16244624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 351
Target Start/End: Complemental strand, 41774572 - 41774504
Alignment:
| Q |
283 |
aatggccaataatagtagttagttgctatttttgttagagggggaagttgaacccatgaccttcttatc |
351 |
Q |
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| T |
41774572 |
aatggccaatgttagtagtcagttgttatttttgttggagggaggagttgaacccatggcctccttatc |
41774504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 349
Target Start/End: Original strand, 15482632 - 15482672
Alignment:
| Q |
309 |
tatttttgttagagggggaagttgaacccatgaccttctta |
349 |
Q |
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| T |
15482632 |
tatttttgttagaggggggagttgaacccatgacctcctta |
15482672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 341
Target Start/End: Complemental strand, 40270933 - 40270892
Alignment:
| Q |
300 |
gttagttgctatttttgttagagggggaagttgaacccatga |
341 |
Q |
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| T |
40270933 |
gttagtagttatttttgttagagggggtagttgaacccatga |
40270892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0325 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0325
Description:
Target: scaffold0325; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 355
Target Start/End: Complemental strand, 15323 - 15287
Alignment:
| Q |
319 |
agagggggaagttgaacccatgaccttcttatcactc |
355 |
Q |
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| T |
15323 |
agaggggtaagttgaacccatgactttcttatcactc |
15287 |
T |
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