View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3781_low_15 (Length: 369)
Name: NF3781_low_15
Description: NF3781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3781_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 11 - 353
Target Start/End: Complemental strand, 51687473 - 51687139
Alignment:
| Q |
11 |
caaaggtcaaactcgaacattttttaccaattcgaccttatctgaagttgttagacactnnnnnnncatatacgagtcttcttttgacaaatcttttggt |
110 |
Q |
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| T |
51687473 |
caaaggtcaaactcgaacattttctaccaattcgaccttatcttaagttgttagacactaaaaaaacatatacgagtcttcttttgacaaatcttttggt |
51687374 |
T |
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| Q |
111 |
tgaagatttgatcactttaaatcttggtttaaccaaaatcacaaaccttgcgttcactgtgccttactttgtttacttgtttaatttatatgtttttaat |
210 |
Q |
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| T |
51687373 |
tgaagatttgatcactttaaatcttggtttaaccaaaatcacaaaccttgcgttcaccgtgccttactt---------gtttaatttatatgtttttaat |
51687283 |
T |
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| Q |
211 |
tgcatcca-ttccattcttcctttacagaaaagcatctacaacatctgtcgttgttgatatacttgcaagagaaatttatgagaaaaagatgttgaagca |
309 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51687282 |
tgcatccaattccattcttcctttacagaaaagcatctacaacatctgtcgttgttgatatacttgcaagagaaatttatgagaaaaagatgttgaagca |
51687183 |
T |
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| Q |
310 |
atcacataaccgaaacccgaggacaaatggctacaaggtaaaac |
353 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
51687182 |
atcacacaaccgaaacccgaggacaaatggctacaaggtaaaac |
51687139 |
T |
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