View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3781_low_18 (Length: 350)
Name: NF3781_low_18
Description: NF3781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3781_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 20 - 340
Target Start/End: Complemental strand, 11822038 - 11821718
Alignment:
| Q |
20 |
atgtaactataaagtaccttagcttgattcaaaaaaccaactgttgcattaggtgctggatcattccaattcactgagaattgaattttgaacaaatttc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
11822038 |
atgtaactataaagtaccttagcttgattcaaaaaaccaactgttgcattaggtgctggatcattccaattcactgagaattgaattttgaacaaattcc |
11821939 |
T |
|
| Q |
120 |
cggcacggtgaggaaatggcgttgcatcggccggaatctgagccatttttccaccataagggttgaaaacaaatccaacttttcccaactcaatcatctt |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11821938 |
cggcacggtgaggaaatggcgttgcatcggccggaatctcagccatttttccaccataagggttgaaaacaaatccaacttttcccaactcaatcatctt |
11821839 |
T |
|
| Q |
220 |
tttccaaatcccttccaaatcatcttttgaaatagctttctgaacataatcagattttctcttaccgaatgtcgcggaattaagattcctatccaaaaga |
319 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||| |
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| T |
11821838 |
tttccatatcccttccaaatcatcttttgaaatagctttctgaacataatcagatttcctcttaccgaaagccgcggaattaagattcctatccaaaaga |
11821739 |
T |
|
| Q |
320 |
ctctccggtttcgcgcctttg |
340 |
Q |
| |
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|||||||||||||| |||||| |
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| T |
11821738 |
ctctccggtttcgcacctttg |
11821718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 20 - 331
Target Start/End: Original strand, 11834326 - 11834637
Alignment:
| Q |
20 |
atgtaactataaagtaccttagcttgattcaaaaaaccaactgttgcattaggtgctggatcattccaattcactgagaattgaattttgaacaaatttc |
119 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
11834326 |
atgtaactatgaagtaccttagcttgattcaaaaaaccaactgttgcattaggtgatggatcatcccaattcactgaatattgaattttgaacaaatttc |
11834425 |
T |
|
| Q |
120 |
cggcacggtgaggaaatggcgttgcatcggccggaatctgagccatttttccaccataagggttgaaaacaaatccaacttttcccaactcaatcatctt |
219 |
Q |
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| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
11834426 |
cagcacggtgaggaaatggcgttgcatcggccggaatctcagcgatttttccaccataagggttgaaaacaaatccaatttttcctaactcaatcatctt |
11834525 |
T |
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| Q |
220 |
tttccaaatcccttccaaatcatcttttgaaatagctttctgaacataatcagattttctcttaccgaatgtcgcggaattaagattcctatccaaaaga |
319 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||| |||||||||||||||| |
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| T |
11834526 |
tttccatatcccttccaaatcatcttttgaaatagctttctgaacataatcagattttctcttacctaaacccgccgaattaacattcctatccaaaaga |
11834625 |
T |
|
| Q |
320 |
ctctccggtttc |
331 |
Q |
| |
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|| |||||||| |
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| T |
11834626 |
ttcaccggtttc |
11834637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 162 - 282
Target Start/End: Complemental strand, 11918241 - 11918121
Alignment:
| Q |
162 |
ccatttttccaccataagggttgaaaacaaatccaacttttcccaactcaatcatctttttccaaatcccttccaaatcatcttttgaaatagctttctg |
261 |
Q |
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||||||||||||||||||| ||||||| | | || ||||| ||||||| ||||||||||||||||| ||||||||| | ||||| ||||| | || || |
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| T |
11918241 |
ccatttttccaccataaggattgaaaaacattacacctttttccaactcgatcatctttttccaaattccttccaaaccctctttagaaattggttcctt |
11918142 |
T |
|
| Q |
262 |
aacataatcagattttctctt |
282 |
Q |
| |
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|||||||||||||||||||| |
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| T |
11918141 |
tacataatcagattttctctt |
11918121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 238
Target Start/End: Complemental strand, 11947606 - 11947572
Alignment:
| Q |
204 |
ccaactcaatcatctttttccaaatcccttccaaa |
238 |
Q |
| |
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|||||| |||||||||||||||||||||||||||| |
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| T |
11947606 |
ccaacttaatcatctttttccaaatcccttccaaa |
11947572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 163 - 282
Target Start/End: Complemental strand, 38126207 - 38126088
Alignment:
| Q |
163 |
catttttccaccataagggttgaaaacaaatccaacttttcccaactcaatcatctttttccaaatcccttccaaatcatcttttgaaatagctttctga |
262 |
Q |
| |
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|||||||||||| |||||||||||| ||||| ||||||||||| ||||||| ||| || | ||||||||||| ||||||||||||| | |||| |
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| T |
38126207 |
catttttccaccgtaagggttgaaagtcaatcctacttttcccaattcaatcagcttcttatatatcccttccaacccatcttttgaaattggattctcc |
38126108 |
T |
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| Q |
263 |
acataatcagattttctctt |
282 |
Q |
| |
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|||||||||||||| ||||| |
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| T |
38126107 |
acataatcagatttcctctt |
38126088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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