View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3781_low_19 (Length: 330)
Name: NF3781_low_19
Description: NF3781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3781_low_19 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 11 - 315
Target Start/End: Complemental strand, 5173922 - 5173617
Alignment:
| Q |
11 |
cataggtcctaggtttcaatccagctctgagaatgcagcagcgttaaaactcttaatggagagttgtatcaccctcgtgactctatttaactcgagggat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5173922 |
cataggtcctaggtttcaatccagctctgagaatgcagcagcgttaaaactcttaatggagagttgtatcaccctcgtgactctatttaactcgagggat |
5173823 |
T |
|
| Q |
111 |
tagtctatatagttgcacgtgaaggatatccgatttacaacgataaataattatgtgcataggcttttgacatgttgttacttgtcattatcctatagct |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5173822 |
tagtctatatagttgcacgtgaaggatatccgatttacaacgataaataattatgtgcataggcttttgacatgttgttacttgtcattatcctatagct |
5173723 |
T |
|
| Q |
211 |
aaaaatgctgctttcaaatttaagtttataaatgatctacaattgaagttcaaaaggttcgtcatcc-aaatttagtgacacaattgagacatcaaatct |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5173722 |
aaaaatgctgctttcaaatttaagtttataaatgatctacaattgaagttcaaaaggttcgtcatccaaaatttagtgacacaattgagacatcaaatct |
5173623 |
T |
|
| Q |
310 |
attttt |
315 |
Q |
| |
|
|||||| |
|
|
| T |
5173622 |
attttt |
5173617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University