View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3781_low_20 (Length: 328)
Name: NF3781_low_20
Description: NF3781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3781_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 6 - 315
Target Start/End: Original strand, 40180048 - 40180357
Alignment:
| Q |
6 |
cataggccttaataatcacattgaaaacgtattttgaaggacgcggtagcggaccgtctgcaatcattttaaagatcaactgcttggctgcatcaaaatc |
105 |
Q |
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| T |
40180048 |
cataggtcttaataatcacattgaaaacttcttttgaaggacgctgtagcggaccgtctgcaatcattttaaagatcaactgcttggctgcatcaaaatc |
40180147 |
T |
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| Q |
106 |
tttaaaccgacacaagcctgtaataacctgccgacagtgcaatagtttagtcccctcttcctggtgctccacctcctgagggaaatcaataacagtcaac |
205 |
Q |
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||||||| |||||||| |||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||| | ||| |||||||||||||||| |
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| T |
40180148 |
tttaaactgacacaaggctgtaataaccttccgacagtgcgatagtttagtcccctcttccttgtgctccacctccttatggatatcaataacagtcaac |
40180247 |
T |
|
| Q |
206 |
aaatccaaagccaaatatacagtttcttttcttgaacaaagtgtgccaaactcaaatattctatggggtaacatcctatctaacgctagcccccagtttg |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
40180248 |
aaatccaaagccaaatatacagtttcttttcttgaacaaagtgtgtcaaactcaaatattctatggggtaacagcctatctaactctagcccccagtttg |
40180347 |
T |
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| Q |
306 |
ggtttctttt |
315 |
Q |
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|||||||||| |
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| T |
40180348 |
ggtttctttt |
40180357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 50 - 121
Target Start/End: Original strand, 38604600 - 38604671
Alignment:
| Q |
50 |
ggtagcggaccgtctgcaatcattttaaagatcaactgcttggctgcatcaaaatctttaaaccgacacaag |
121 |
Q |
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| T |
38604600 |
ggtagcggaccatcttctatcattttaaagatcaattgcttggctgcatcgaaatcttcaaaccgacacaag |
38604671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 247
Target Start/End: Original strand, 38604765 - 38604797
Alignment:
| Q |
215 |
gccaaatatacagtttcttttcttgaacaaagt |
247 |
Q |
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| T |
38604765 |
gccaaatatacagtttctttttttgaacaaagt |
38604797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 44460794 - 44460734
Alignment:
| Q |
61 |
gtctgcaatcattttaaagatcaactgcttggctgcatcaaaatctttaaaccgacacaag |
121 |
Q |
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||||||||||||||||| ||||||||||||||||| || ||||||||||||| ||||||| |
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| T |
44460794 |
gtctgcaatcattttaaggatcaactgcttggctgtttcgaaatctttaaacccacacaag |
44460734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 44468327 - 44468267
Alignment:
| Q |
61 |
gtctgcaatcattttaaagatcaactgcttggctgcatcaaaatctttaaaccgacacaag |
121 |
Q |
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||||||||||||||||| ||||||||||||||||| || ||||||||||||| ||||||| |
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| T |
44468327 |
gtctgcaatcattttaaggatcaactgcttggctgtttcgaaatctttaaacccacacaag |
44468267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 34501890 - 34501950
Alignment:
| Q |
61 |
gtctgcaatcattttaaagatcaactgcttggctgcatcaaaatctttaaaccgacacaag |
121 |
Q |
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||||||||||||||||| |||||||| ||||||||| || |||| |||||||| ||||||| |
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| T |
34501890 |
gtctgcaatcattttaaggatcaacttcttggctgcttctaaatttttaaacccacacaag |
34501950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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