View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3781_low_22 (Length: 319)
Name: NF3781_low_22
Description: NF3781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3781_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 48672264 - 48671959
Alignment:
| Q |
1 |
attctagaagcttccatgttcttgtcactcaattcaagattcttttgaagctcatcaagaatggttttgctagcagcatgcacacaaaaatgctcaaaag |
100 |
Q |
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| T |
48672264 |
attctagaagcttccatgttcttgtcactcaattcaagattcttttgaagctcatcaagaatggttttgctggcagcatgcacacaaaaatgctcaaaag |
48672165 |
T |
|
| Q |
101 |
ctagtttgtagttaggaatgtatggcttgtttgatgatggtgaatttttatcagattttccaccaccaaaccagttcctccacactaatgtagcaaagaa |
200 |
Q |
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| T |
48672164 |
ctagtttgtagttaggaatgtatggcttgtttgatgatggtgaatttttatcagattttccaccaccaaaccagttcctccacactaatgtagcaaagaa |
48672065 |
T |
|
| Q |
201 |
aataagctgttctgaaaagggtaggaccaatggtcctagtgttgtgatgttagttttgagagcttcgccaccaatttcaattaagtctttgcttatcttt |
300 |
Q |
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| T |
48672064 |
aataagctgttctgaaaagggtaggaccaatggtcctagtgttgtgatgttagttttgagagcttcgccaccaatttcaattaagtctttgcttatcttt |
48671965 |
T |
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| Q |
301 |
attcct |
306 |
Q |
| |
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|||||| |
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| T |
48671964 |
attcct |
48671959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 266
Target Start/End: Complemental strand, 15239368 - 15239322
Alignment:
| Q |
220 |
ggtaggaccaatggtcctagtgttgtgatgttagttttgagagcttc |
266 |
Q |
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|||||||| |||||||||| |||||||||||| |||||||| ||||| |
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| T |
15239368 |
ggtaggactaatggtcctaatgttgtgatgtttgttttgagtgcttc |
15239322 |
T |
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